Showing : snp • reset
0
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3
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1.1k
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How to getting synonymous SNPs from BiomaRt before timing out?
biomaRt SNP
updated 2.0 years ago by 68k • written 2.0 years ago by • 0
0
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0
replies
850
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Human to mouse SNP conversion
liftOver SNP GWASTools
2.0 years ago bonheur • 0
0
votes
4
replies
1.2k
views
Which software can prune 5 Million SNPs?
LinkageDisequilibrium SNP gwas GWASdata ldblock
2.1 years ago Weiqiong • 0
0
votes
1
reply
1.3k
views
How to remove INDELS/SNPs from a bed file
SNP
updated 2.4 years ago by 68k • written 2.4 years ago by • 0
0
votes
0
replies
699
views
Database for exploring annotations of the coding genome at variants, such as candidate regulatory SNPs at disease-associated loci.
SNP ExomeSeqData snapcount SNAData SNPRelate
2.4 years ago m610110001 • 0
0
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0
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955
views
ACMG Annotations for Variants in R
ACMG SNP
2.8 years ago hamza_karakurt ▴ 60
0
votes
2
replies
3.7k
views
How to get the rsID of 4 million SNPA
ensembldb SNP SNPData genomes
written 3.1 years ago by • 0
0
votes
1
reply
1.6k
views
SNP annotation
SNPRelate SNP GWASTools Annotation GWASdata
updated 3.2 years ago by ▴ 890 • written 3.3 years ago by • 0
0
votes
1
reply
1.1k
views
Get CHR & POS for a list of SNP rs ids (>1M)
POS CHR SNP rs
updated 3.5 years ago by 68k • written 3.5 years ago by • 0
0
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0
replies
1.2k
views
Reading Affymetrix Axiom files
affy SNP axiom
3.9 years ago f.calboli • 0
0
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0
replies
949
views
Extract flanking sequences SNP without reference genome
SNPData snpStats SNP flankingsequences
4.0 years ago Amber • 0
5
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4
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14k
views
Getting rs ids using chr coordinates | Biomart
SNP rs id Biomart Chromosome coordinates
updated 21 months ago by 68k • written 4.6 years ago by • 0
6
votes
11
replies
2.4k
views
"associated_gene" attribute from biomaRt returns too few values - SNP(rsID dataset)
r biomart SNP annotation HUGO
updated 4.7 years ago by ★ 6.6k • written 4.7 years ago by • 0
2
votes
2
replies
3.4k
views
How to convert 1000 genomes VCF files to the format of traditional SNP array format?
SNP 1000genome
updated 4.7 years ago by 25k • written 4.7 years ago by ▴ 20
1
vote
2
replies
1.7k
views
TCGA MAF (Mutations) data
TCGA MAF GDC snp mutations
updated 5.9 years ago by 21k • written 5.9 years ago by ▴ 160
0
votes
0
replies
1.1k
views
genetic and linkage maps construction
genetic map linkage maps SNP assembly GBS
6.2 years ago mictadlo ▴ 10
0
votes
0
replies
963
views
R: estimating error rate of replicated samples
R SNP genotyping genetic diversity
6.2 years ago meriam.nef • 0
0
votes
0
replies
1.8k
views
How to extract SNPs from multiple alignment fasta file?
snp multiple sequence alignment fasta Tutorial
updated 6.5 years ago by 25k • written 6.5 years ago by • 0
0
votes
11
replies
4.1k
views
SNP6 data to VCF
SNP oligo ASSIGN SNP oligo ASSIGN
updated 6.6 years ago by • 0 • written 13.2 years ago by 21k
0
votes
1
reply
1.7k
views
Finding/Understanding Affy 6.0 Annotation File
affy affymetrix microarray SNP
6.7 years ago CantExitVIM ▴ 10
3
votes
5
replies
2.1k
views
Understanding PureCN and its germline SNPs
PureCN germline SNP
updated 6.9 years ago by • 0 • written 7.0 years ago by ▴ 10
0
votes
1
reply
2.1k
views
VCF file non-SNP germline mutations
PureCN VCF SNP
updated 6.9 years ago by ▴ 130 • written 6.9 years ago by ▴ 10
0
votes
3
replies
2.4k
views
dbSNP - getting details of Pubmed ID for a SNP
SNP SNP
updated 7.0 years ago by • 0 • written 15.2 years ago by ▴ 180
0
votes
1
reply
1.6k
views
How to draw venn diagram with four CSV files
R SNP venn diagram
updated 7.2 years ago by 68k • written 7.2 years ago by • 0
0
votes
0
replies
1.0k
views
Wtccc sanger dataset
SNP
7.2 years ago hadeel.alzoubi • 0
0
votes
1
reply
1.5k
views
How to map a SNP to all genes within 50kb (upstream or downstream) of the SNP?
annotation R snp
updated 7.7 years ago by 68k • written 7.7 years ago by ▴ 10
0
votes
0
replies
1.1k
views
Error when changing the database for minfi dropLociWithSnps
minfi methylationepic illuminahumanmethylationepicanno.ilmn10b.hg19 SNP
7.7 years ago Ellen O • 0
2
votes
1
reply
1.5k
views
GenomicAlignments/access correct bp positions near indels
genomicranges genomicalignments snp
updated 7.9 years ago by 16k • written 7.9 years ago by ▴ 90
3
votes
4
replies
1.8k
views
How often are SNPlocs.Hsapiens.dbSNP-* packages released? and why that time scale?
SNPlocs SNP dbsnp
8.1 years ago Ramiro Magno ▴ 100
1
vote
2
replies
4.2k
views
Calculate the number of SNP differences between sequences in multiple alignment
pairwisealignment SNP dnasequence
8.1 years ago lordbleys • 0
3
votes
3
replies
2.2k
views
Retrieve SNP flanking sequences in biomaRt
biomart snp upstream_flank downstream_flank
updated 8.4 years ago by ★ 6.6k • written 8.4 years ago by ▴ 20
0
votes
2
replies
1.9k
views
injectSNPS only for common variants
snp snplocs
updated 8.4 years ago by ★ 3.4k • written 8.4 years ago by • 0
0
votes
3
replies
2.7k
views
Gramene now available via biomaRt
SNP Transcription biomaRt Vega SNP Transcription biomaRt Vega
updated 8.5 years ago by • 0 • written 18.1 years ago by ▴ 580
0
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0
replies
1.3k
views
vizualization of mutations
genomes SNP
8.5 years ago Bogdan ▴ 670
0
votes
0
replies
1.3k
views
Illumina Genotyping in parallel raise an error
crlmm snp illumina
8.8 years ago nadne ▴ 10
1
vote
0
replies
2.3k
views
Job: Bioinformatics Scientist @ Berlin Institute for Medical Systems Biology
rnaseq snp chipseq Job
8.8 years ago altuna akalin ▴ 20
0
votes
1
reply
1.5k
views
Error with FunciSNP
snp R gwastools
9.0 years ago • updated 8.9 years ago musomilan • 0
2
votes
3
replies
2.7k
views
ggbio circular plot
ggbio SNP granges
updated 9.3 years ago by ★ 11k • written 9.3 years ago by • 0
5
votes
9
replies
4.7k
views
Looking for annotation file for Affymetrix SNP 6.0
copynumber snp affymetrix
9.4 years ago • updated 9.3 years ago KB ▴ 50
0
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1
reply
1.3k
views
Distance measure used by snpgdsPCA in SNPRelate
snp clustering
9.5 years ago mattcott • 0
1
vote
2
replies
2.6k
views
DNAcopy: Using log-ratios and B-allele frequencies
sequencing snp
updated 9.5 years ago by ▴ 20 • written 9.5 years ago by • 0
0
votes
0
replies
1.3k
views
News: gwascat package updated: new features in devel branch
GWAS genetic epidemiology SNP News
9.7 years ago Vincent J. Carey, Jr. 6.7k
0
votes
2
replies
4.2k
views
Bioconductor 2.12 is released
BiocViews aCGH SNP Transcription Sequencing Microarray Coverage Alignment Annotation GO
updated 9.7 years ago by • 0 • written 12.0 years ago by ★ 8.2k
0
votes
6
replies
2.7k
views
dbSNP build for R package SNPlocs.Hsapiens.dbSNP.20080617
SNP Cancer SNPlocs SNP Cancer SNPlocs
updated 9.7 years ago by • 0 • written 15.8 years ago by 16k
0
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1
reply
1.5k
views
trouble with predictCoding( function
snp variantannotation predict coding
9.8 years ago vakul.mohanty ▴ 20
0
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2
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3.6k
views
Pipeline for analyzing CNV (SNP array) level 3 from TCGA
SNP CNV TCGA
9.9 years ago NS ▴ 60
0
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2
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5.3k
views
biomaRt: SNP no access to grch37.ensembl.org
SNP biomart archive grch37
10.1 years ago mrprao • 0
0
votes
0
replies
1.6k
views
DNAcopy default settings and SNP6.0 arrays
SNP DNAcopy SNP6.0 CNV
10.2 years ago giovanni.dario • 0
1
vote
6
replies
2.7k
views
Good way to get location of in-del SNPs in UCSC coordinates?
snplocs snp
10.4 years ago • updated 10.3 years ago garrisrg ▴ 10
1
vote
2
replies
1.9k
views
biomaRt error message
biomaRt snp
updated 10.4 years ago by ▴ 800 • written 10.4 years ago by ▴ 10
50 results • Page 1 of 1
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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30
I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k
The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k
> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…
Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0
Thank you so much for sharing the link.
Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0
I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…
Votes
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
Two EPIC Methylation Array Analysis Questions
How to get DMR for Infinium methylation EPIC v2
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
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