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gwas
•
reset
0
votes
4
replies
817
views
Which software can prune 5 Million SNPs?
LinkageDisequilibrium
SNP
gwas
GWASdata
ldblock
15 months ago
Weiqiong
• 0
0
votes
0
replies
778
views
Job:
Postdoc position - Genetic epi/statistical genetics
GWAS
cancer
biomarkers
PRS
2.0 years ago
Sarah
• 0
0
votes
0
replies
781
views
Job:
Research Associate, statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
molecularQTL
biostatistics
computationalbiology
GWAS
2.0 years ago
helene.ruffieux
• 0
0
votes
0
replies
734
views
Job:
Research Associate, computational/statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
molecularQTL
computationalbiology
immunology
GWAS
biostatistics
2.3 years ago
helene.ruffieux
• 0
0
votes
1
reply
703
views
gwas power calculation for quantitative traits
power
GWAS
written 2.8 years ago by
rajya82
• 0
1
vote
2
replies
4.2k
views
Why are my p-values deflated (GWAS)?
gwas
genesis
p-value
q-q-plot
updated 3.4 years ago by
Anna
• 0 • written 4.5 years ago by
solanum
• 0
0
votes
0
replies
949
views
Job:
Postdoc: BIOINFORMATICS FOR FUNCTIONAL GENOMICS AND POPULATION GENETICS OF CANCER
GWAS
lung cancer
functional genomics
eQTL
sequencing
Job
4.2 years ago
jiyeon.choi2
• 0
0
votes
3
replies
1.2k
views
GENESIS: ascertainment in GWAS
genesis
fitnullmodel
gwas
ascertainment
updated 4.9 years ago by
mconomos
▴ 70 • written 4.9 years ago by
ferranpauls10
• 0
0
votes
0
replies
758
views
Which R package has a test for a gene by environment interaction using imputed data and a quantitative phenotype?
GWAS
CGEN
gxe
5.3 years ago
pwjeffries
• 0
0
votes
1
reply
1.0k
views
Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS
GWAS
resampling
resample
statistics
5.4 years ago
naglemi
▴ 10
1
vote
1
reply
951
views
Difference between AssocTestMM (GENESIS) and EMMAX? Why results are different?
GENESIS
GWAS
AssocTestMM
updated 5.6 years ago by
mconomos
▴ 70 • written 5.6 years ago by
naglemi
▴ 10
0
votes
1
reply
1.0k
views
Unable to build GDS with more than 255 scaffolds?
GENESIS
GWAS
GDS
updated 5.7 years ago by
zhengx
▴ 30 • written 5.7 years ago by
naglemi
▴ 10
0
votes
0
replies
899
views
how to: enrichment (over representation) analysis of GWAS/QTL data distributed over a genome with GOSEQ
goseq
enrichment
GWAS
5.8 years ago
zhu
• 0
0
votes
3
replies
1.2k
views
GENESIS: assocTestMM error for lack of sex chromosome info (not relevant for this species)
GENESIS
assoctestmm
GWAS
updated 5.9 years ago by
mconomos
▴ 70 • written 5.9 years ago by
naglemi
▴ 10
3
votes
4
replies
1.5k
views
Why is assocTestMM running with only a fraction of SNPs in genotype data?
LMM
GWAS
GENESIS
assocTestMM
updated 5.9 years ago by
mconomos
▴ 70 • written 5.9 years ago by
naglemi
▴ 10
0
votes
1
reply
948
views
GWAS: access Imputation probabilities: snpStats
gwas
snpstats
GWAS
Imputation
snpStats
6.0 years ago
GENOMIC_region
• 0
0
votes
0
replies
1.1k
views
Job:
BIOINFORMATICIAN I at Brigham and Women's Hospital, Boston, MA, USA
rna-seq
gwas
R
bioconductor
Job
6.9 years ago
IV
▴ 30
2
votes
0
replies
1.4k
views
Job:
Two year postdoc position at Trento, Laboratory of Neurogenomic Biomarkers, Italy
job
GWAS
genetics
genomics
neuro
Job
8.0 years ago
enridomenici
▴ 10
0
votes
0
replies
1.1k
views
News:
gwascat package updated: new features in devel branch
GWAS
genetic epidemiology
SNP
News
8.9 years ago
Vincent J. Carey, Jr.
6.7k
19 results • Page
1 of 1
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Comment: Installing Bioconductor packages in Docker
by
Jon Bråte
▴ 250
How do you run your image after this? I need to specify a password...
Comment: Single Cell Experiment : Differential Expression "List of length 0" - Help!
by
ATpoint
★ 4.2k
What is the relationship between side and label?
Comment: Single Cell Experiment : Differential Expression "List of length 0" - Help!
by
vohara4
• 0
Thank you so much for your response. I've just tried adding Side to the summed object in both of the following manners, but I still get a "…
Answer: Single Cell Experiment : Differential Expression "List of length 0" - Help!
by
mikasi1612
• 0
Every time I enjoy [St Michel Galettes][1], purchased from Europafoodxb, it feels like a treat from a French bakery. These cookies are wond…
Comment: Single Cell Experiment : Differential Expression "List of length 0" - Help!
by
ATpoint
★ 4.2k
My guess is that `Side` did not make it into the summed object. You aggregate the SCE to summed with label and SampleName. How would the fu…
Votes
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
A: How to do a confounding variable adjustment without using the treatment informat
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Comment: Error: no such table: main.gene2pubmed when running makeOrgPackageFromNCBI() fr
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