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liftOver
•
reset
0
votes
0
replies
533
views
Human to mouse SNP conversion
liftOver
SNP
GWASTools
14 months ago
bonheur
• 0
2
votes
2
replies
1.6k
views
broken chain import in liftOver
lifto
liftOver
updated 2.0 years ago by
Marcel Ramos
700 • written 2.1 years ago by
james.dalgleish
• 0
2
votes
3
replies
1.7k
views
liftOver bug, reproducible
liftOver
rtracklayer
updated 3.3 years ago by
James W. MacDonald
66k • written 3.3 years ago by
Mikhail Dozmorov
▴ 30
0
votes
1
reply
1.4k
views
How to convert build 37 to build 38?
liftOver
updated 3.5 years ago by
shepherl
3.9k • written 3.5 years ago by
bluepebbles
• 0
0
votes
0
replies
858
views
liftOver (R-package) how to recognize the "#Partially deleted in new" in the result ???
liftOver
3.6 years ago
geneprophet
• 0
1
vote
3
replies
1.3k
views
DMRcate liftover to grch38
hg19
liftover
matrixeqtl
DMRcate
updated 5.0 years ago by
James W. MacDonald
66k • written 5.0 years ago by
yoursbassanio
▴ 10
0
votes
1
reply
1.3k
views
rtracklayer::Problem with export.bw of GRanges object created by unlisted after liftover from mm9 to mm10 of wig file
rtracklayer
export.bw
liftover
updated 5.5 years ago by
Michael Lawrence
★ 11k • written 5.5 years ago by
ang
▴ 20
0
votes
1
reply
1.2k
views
rtracklayer::liftOver parameters (minMatch)
rtracklayer
liftOver
parameters
minMatch
updated 6.1 years ago by
Michael Lawrence
★ 11k • written 6.1 years ago by
Nik dAK
▴ 10
2
votes
3
replies
2.9k
views
rtracklayer::lifOver one-to-many regions and not match UCSC
rtracklayer
liftover
bioconductor
R
updated 6.8 years ago by
Michael Lawrence
★ 11k • written 6.8 years ago by
m.guelfi
• 0
0
votes
2
replies
1.7k
views
liftOver function in rtracklayer package is not working
liftover
rtracklayer
updated 6.8 years ago by
Michael Lawrence
★ 11k • written 6.8 years ago by
beausoleilmo
• 0
2
votes
10
replies
2.2k
views
Trouble Installing lifOver workflow
software error
liftOver
workflowinstall
package installation
updated 7.7 years ago by
James W. MacDonald
66k • written 7.7 years ago by
JustGettinStarted
• 0
11 results • Page
1 of 1
Recent ...
Replies
Comment: How to compare subset of samples from VCF files
by
Gordon Smyth
50k
Welcome to Bioconductor support. Did you know that you can delete your old postings if they haven't received an answer yet? Instead of ap…
Comment: How to compare subset of samples from VCF files
by
Marco
• 0
Here's the vcf file as code block ``` ##fileformat=VCFv4.2 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth"> ##FOR…
Comment: Gviz and custom database
by
James W. MacDonald
66k
The vignette for `Gviz` says you can use a `DNAStringSet`, generated using `Biostrings`. Have you tried that?
Comment: Gviz and custom database
by
luigi.faino
• 0
Dear, this is not what I need. I need to transform a fasta sequence in a genome track usable in Gviz. L
Answer: Gviz and custom database
by
James W. MacDonald
66k
https://bioconductor.org/packages/release/bioc/vignettes/txdbmaker/inst/doc/txdbmaker.html
Votes
Answer: makeExampleDESeqDataSet using pilot data
Answer: Checking/updating package versions
Answer: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)?
convert data frame of Entrez IDs to Gene Symbols
Answer: LRT, pairwise comparisons and p-value adjustment
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Gordon Smyth
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Marco Blanchette
▴ 30
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Fred Hutch (Recruiting)
▴ 40
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James W. MacDonald
66k
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Levi Waldron
★ 1.1k
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