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snpStats
•
reset
1
vote
2
replies
1.3k
views
Error in ld(): STRING_ELT() can only be applied to a 'character vector', not a 'NULL'
ld()
snpStats
2.5 years ago
Anastasiia
• 0
0
votes
0
replies
754
views
Extract flanking sequences SNP without reference genome
SNPData
snpStats
SNP
flankingsequences
3.2 years ago
Amber
• 0
0
votes
0
replies
623
views
Coercion of a numeric matrix into a SnpMatrix
snpStats
4.4 years ago
schandry
• 0
0
votes
1
reply
948
views
GWAS: access Imputation probabilities: snpStats
gwas
snpstats
GWAS
Imputation
snpStats
6.0 years ago
GENOMIC_region
• 0
1
vote
1
reply
1.3k
views
reading ped error when using the snpStats library
snpstats
ped file
R
6.6 years ago
kzelaya2
▴ 10
0
votes
0
replies
1.1k
views
snp.rhs.estimates and/or .tests and extracting results
snpStats
additive model
7.3 years ago
natalie.jean.mcdonald
• 0
1
vote
0
replies
1.1k
views
Error when computing ld with snpStats in big samples
software error
snpstats
`ld
8.0 years ago
carlos.ruiz
• 0
1
vote
1
reply
1.6k
views
Write the "map" DataFrame from genotypeToSnpMatrix() to a text file
variantannotation
DataFrame
snpstats
8.6 years ago
TimothéeFlutre
▴ 80
1
vote
2
replies
1.9k
views
Automatic NA values generated by the ld() function of snpStats package
snpStats
BioConductor
LD
Linkage Disequilibrium
NA
9.3 years ago
remi.tournebize
▴ 10
0
votes
1
reply
1.3k
views
snp analysis GWAS
snpstats
updated 9.6 years ago by
Steve Lianoglou
★ 13k • written 9.6 years ago by
ahmadamareen1985
• 0
0
votes
0
replies
1.7k
views
(snpStats) Error: Error in terms.formula(formula, special, data = data) : invalid term in model formula
software error
snpStats
9.6 years ago
vickygarfield87
• 0
0
votes
0
replies
1.0k
views
Are the 'trait' and 'phenotype' objects in the snpStats snp.rhs.estimates command the same thing?
snpStats
9.6 years ago
vickygarfield87
• 0
0
votes
1
reply
1.7k
views
snpStats reference allele used in genetic associations?
SNP
Category
snpStats
SNP
Category
snpStats
updated 10.1 years ago by
Vincent J. Carey, Jr.
6.7k • written 10.1 years ago by
Guest User
★ 13k
0
votes
3
replies
1.7k
views
Error reading imputed file using snpStats package
SNP
snpStats
SNP
snpStats
updated 10.4 years ago by
Vincent J. Carey, Jr.
6.7k • written 10.4 years ago by
francesca casalino
▴ 50
0
votes
1
reply
1.6k
views
[R] freetype 2.5.2, problem with the survival package, build R 2.15.x with gcc 4.8.x
Regression
Survival
snpStats
Regression
Survival
snpStats
10.5 years ago
David Winsemius
▴ 40
0
votes
0
replies
2.0k
views
Plink Data for Fst Calculations
snpStats
snpStats
10.5 years ago
Voke AO
▴ 760
0
votes
3
replies
1.2k
views
SNPstats package bug report
snpStats
snpStats
10.5 years ago
Guest User
★ 13k
0
votes
0
replies
1.9k
views
snpStats/GWASTools conversion
cdf
convert
snpMatrix
snpStats
GWASTools
cdf
convert
snpMatrix
snpStats
GWASTools
10.7 years ago
Stephanie M. Gogarten
▴ 870
0
votes
0
replies
1.1k
views
snpStats Fst Implementation
snpStats
snpStats
10.8 years ago
Voke AO
▴ 760
0
votes
1
reply
1.4k
views
col.summary error in snpStats
SNP
Sequencing
Annotation
snpMatrix
snpStats
SNP
Sequencing
Annotation
snpMatrix
snpStats
updated 11.2 years ago by
Vincent J. Carey, Jr.
6.7k • written 11.2 years ago by
Tereza Jezkova - personal
▴ 10
0
votes
1
reply
1.3k
views
snpStats --- MAF in Pedigrees
snpStats
snpStats
updated 11.4 years ago by
Vincent J. Carey, Jr.
6.7k • written 11.4 years ago by
Samuel Younkin
▴ 60
0
votes
0
replies
1.0k
views
statistics from snpStats objects
SNP
snpStats
SNP
snpStats
12.0 years ago
james power
▴ 10
0
votes
3
replies
2.8k
views
GWAS with Affymetrix SNP 6.0
SNP
oligo
snpMatrix
snpStats
SNP
oligo
snpMatrix
snpStats
updated 12.0 years ago by
Vincent J. Carey, Jr.
6.7k • written 12.0 years ago by
David Hervás
▴ 20
0
votes
4
replies
1.6k
views
snpStats, read.long, alleles in two columns
SNP
Genetics
snpStats
SNP
Genetics
snpStats
updated 12.3 years ago by
David Clayton
▴ 20 • written 12.3 years ago by
Liz Hare
▴ 30
0
votes
2
replies
1.5k
views
Weird error when installing VariantAnnotation and/or snpStats (whether from SVN or using biocLite)
snpStats
snpStats
updated 12.7 years ago by
Martin Morgan
25k • written 12.7 years ago by
Tim Triche
★ 4.2k
25 results • Page
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Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
by
isaac.vock
• 0
Thank you for looking into this and for your explanation! As a follow-up, would it be possible in future releases of featureCounts to pro…
Comment: error loading collectTRI regulon
by
silvaesilva.da
• 0
Fantastic. Thank you very much. Everything has been sorted out
Answer: DESeq2 returns results for group with just one replicate
by
James W. MacDonald
66k
There is no problem having only one replicate per group, so long as you have replicates for other groups. The degrees of freedom are based …
Answer: Limma model.matrix design with batch effect and different life stages proportion
by
Masongeorge
• 0
Thanks for this post. i found it helpful for my own issue that was occurring on the backend of this page.
Comment: error loading collectTRI regulon
by
deeenes
▴ 50
I fixed the original, Ensembl HTTP 403 error only now, [see here][1]. If you've seen it gone earlier today, only shows that this error appe…
Votes
Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
Answer: DESeq2 returns results for group with just one replicate
Answer: DESeq2 returns results for group with just one replicate
Comment: error loading collectTRI regulon
A: Scaling option in fastMNN
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