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Showing :
ggbio
•
reset
1
vote
5
replies
1.2k
views
how can I add a label for granges using the geom_rect ?
ggbio
23 months ago
潘晓光
• 0
0
votes
7
replies
1.4k
views
Uniform window size for different genes
ggbio
2.8 years ago
rbenel
▴ 40
0
votes
0
replies
801
views
Remove space on x-axis
ggbio
3.1 years ago
sophieagger
• 0
0
votes
2
replies
1.2k
views
Error in GenomeInfoDb:::makeNewSeqnames
GenomeInfoDb
ggbio
3.8 years ago
Konstantinos Yeles
▴ 80
18
votes
4
replies
2.0k
views
`ggbio` package can't be loaded
ggbio
3.8 years ago
Batool
▴ 370
0
votes
2
replies
1.4k
views
ggbio autoplot() error "object of type 'symbol' is not subsettable"
ggbio
4.0 years ago • updated 3.9 years ago
Andrew
• 0
0
votes
2
replies
897
views
Does biovizBase contain a genesymbol data set for other model organisms?
biovizBase
ggbio
updated 4.6 years ago by
James W. MacDonald
67k • written 4.6 years ago by
moldach
▴ 20
0
votes
2
replies
991
views
ggbio tracks not aligned when legend present in one track
ggbio
updated 4.9 years ago by
Michael Lawrence
★ 11k • written 4.9 years ago by
Janet Young
▴ 740
0
votes
6
replies
2.5k
views
Error while attempting to forge BSgenome data package
bsgenome
ggbio
updated 5.0 years ago by
serfraz.saad
• 0 • written 10.0 years ago by
pterry
• 0
1
vote
3
replies
1.8k
views
ggbio - change transcript label sizes
ggbio
annotation
updated 2.5 years ago by
chrisclarkson100
▴ 50 • written 5.2 years ago by
Kevin Blighe
★ 4.0k
12
votes
7
replies
4.8k
views
Plot ggplot2 and ggbio Images Together
ggplot2
ggbio
cowplot
updated 5.3 years ago by
Assa Yeroslaviz
★ 1.5k • written 9.4 years ago by
andrew.j.skelton73
▴ 370
0
votes
0
replies
998
views
ggbio error when following tutorial, ideogram not highlighted, genetrack not working
ggbio
ideogram
autoplot
5.9 years ago
gpwhiz
▴ 10
0
votes
0
replies
1.0k
views
Recommendation for visualizing ChIP-qPCR data?
R
chip-seq
histone chip-seq
ggbio
5.9 years ago
Ramiro Magno
▴ 100
1
vote
2
replies
1.8k
views
ggbio won't plot ideogram in R version 3.3.1, ggplot2 version 3.1.0
ggbio
ggplot2
5.9 years ago
t.fadason
▴ 10
0
votes
9
replies
3.3k
views
Featurecounts issue for counting exons: Not matching total counts mapped for specific gene
featurecounts
Rsubread
ggbio
updated 5.9 years ago by
Wei Shi
★ 3.6k • written 5.9 years ago by
A
▴ 40
0
votes
0
replies
1.1k
views
xlim not working with ggbio
ggbio
6.0 years ago
marisa.e.miller
• 0
1
vote
1
reply
1.2k
views
ggbio labels with ggrepeal on circos plot
ggbio
r
graphics
6.1 years ago
gamma.jian
▴ 10
2
votes
2
replies
1.1k
views
aes label in ggbio_1.26.1 with ggplot2_3.0.0
ggbio
ggplot2
6.1 years ago
Lescai, Francesco
▴ 380
0
votes
2
replies
1.1k
views
visualization of chromatin interaction networks
gviz
ggbio
karyotypeR
updated 6.3 years ago by
Aaron Lun
★ 28k • written 6.3 years ago by
Bogdan
▴ 670
0
votes
0
replies
2.0k
views
ggbio Error: Don't know how to add o to a plot
software error
ggbio
ggplot2
6.3 years ago
zhe
▴ 20
0
votes
0
replies
901
views
Circular plot of transcript models with ggbio.
ggbio
7.0 years ago
Charles Plessy
▴ 180
0
votes
2
replies
1.8k
views
Cytoband information for rice
rice
cytoband
circlize
ggbio
ideogram
7.3 years ago
Didi
▴ 10
2
votes
5
replies
3.6k
views
Error in GenomeInfoDb:::getDanglingSeqlevels
ggbio
7.4 years ago
Bogdan
▴ 670
0
votes
1
reply
3.5k
views
an error in ggbio: "Breaks and labels are different lengths"
ggbio
ggplot2
7.6 years ago
Bogdan
▴ 670
0
votes
1
reply
1.6k
views
In ggbio, plot transcripts from a TxDb with gene labels
ggbio
updated 7.7 years ago by
Michael Lawrence
★ 11k • written 7.7 years ago by
grp2009
• 0
1
vote
4
replies
3.0k
views
Giemsa stain annotation/nomenclature for UCSC cytoband tracks
ucsc
ucsctrack
ggbio
Gviz
hg19
updated 7.7 years ago by
maximilianh
▴ 10 • written 7.7 years ago by
metamaden
▴ 10
1
vote
3
replies
3.1k
views
Combining LD matrix plot with SNP and gene data with ggplot / ggbio tracks() function
ggplot2
ggbio
plot
tracks
bioconductor
updated 7.8 years ago by
Michael Lawrence
★ 11k • written 7.8 years ago by
oswaldo.lorenzo
▴ 10
2
votes
4
replies
1.5k
views
ggbio tracks () does not allow "call" class in the "main" slot of the function
ggbio
ggplot2
call
plot
updated 7.8 years ago by
Michael Lawrence
★ 11k • written 7.8 years ago by
oswaldo.lorenzo
▴ 10
0
votes
2
replies
1.5k
views
tracks () function from ggbio does not allow italic expression in the title
ggbio
ggplot2
title
typography
8.1 years ago • updated 7.8 years ago
oswaldo.lorenzo
▴ 10
0
votes
3
replies
1.7k
views
ggbio: integrate different plots
ggbio
updated 7.9 years ago by
Michael Lawrence
★ 11k • written 7.9 years ago by
andreucat91
• 0
0
votes
1
reply
1.4k
views
ggbio tracks issue
ggbio
tracks
7.9 years ago
longoka
• 0
7
votes
9
replies
3.2k
views
Install ggbio development version
ggbio
development
package installation
updated 8.0 years ago by
Martin Morgan
25k • written 8.0 years ago by
zx8754
▴ 10
1
vote
1
reply
1.4k
views
Add main title to ggbio's karyogram
ggbio
karyogram
granges
updated 8.1 years ago by
Michael Lawrence
★ 11k • written 8.1 years ago by
TimothéeFlutre
▴ 80
0
votes
1
reply
2.2k
views
Missing levels in legend using autoplot () + scale_color_manual () functions
ggbio
ggplot2
legend
bioconductor
karyiogram
8.1 years ago
oswaldo.lorenzo
▴ 10
1
vote
1
reply
1.8k
views
How to show chromosome position and SNP label at the same time in x axis
ggbio
ggplot2
genomics
plot
8.1 years ago
oswaldo.lorenzo
▴ 10
0
votes
1
reply
2.5k
views
Ideogram not alligned with ggbio and tracks()
ggbio
ggplot2
updated 8.1 years ago by
oswaldo.lorenzo
▴ 10 • written 8.5 years ago by
my4
▴ 10
0
votes
2
replies
1.3k
views
ggbio: untransformed coordinate when using `tracks` function with IRanges or numeric value as `xlim`
ggbio
tracks
updated 8.2 years ago by
oswaldo.lorenzo
▴ 10 • written 8.2 years ago by
Marlin
▴ 20
2
votes
3
replies
1.9k
views
ggbio tracks() function handling x axis in the wrong way
ggbio
ggplot2
tracks
genomics
plot
8.2 years ago
oswaldo.lorenzo
▴ 10
0
votes
0
replies
1.1k
views
Highlighting Significantly Associated Sites on Manhattan Plot using ggbio
ggbio
manhattan plot
plotGrandLinear
8.2 years ago
graggsd
• 0
0
votes
1
reply
1.3k
views
problem loading gwascat and ggbio
gwascat
ggbio
Mac
8.3 years ago
jameshunterbr
• 0
0
votes
0
replies
975
views
ggbio: axis in karyogram line graph overlay
ggbio
8.4 years ago
map2085
▴ 40
0
votes
1
reply
1.2k
views
ggbio axis in karyogram
ggbio
updated 2.2 years ago by
Stephan
• 0 • written 8.4 years ago by
map2085
▴ 40
0
votes
0
replies
1.0k
views
Cannot replicate VCF plot from help page
ggbio
8.4 years ago
kevin.rue
▴ 350
0
votes
0
replies
1.2k
views
ggbio plotIdeogram(..., zoom.region) broken ?
ggbio
biovizBase
8.4 years ago
kevin.rue
▴ 350
0
votes
1
reply
1.4k
views
ggbio OrganismDb autoplot - reduce vs identity
ggbio
autoplot
updated 8.5 years ago by
James W. MacDonald
67k • written 8.5 years ago by
Lescai, Francesco
▴ 380
0
votes
2
replies
1.5k
views
Cannot replicate circle plot vignette output in ggbio devel
software error
ggbio
circle plot
updated 8.6 years ago by
Michael Lawrence
★ 11k • written 8.6 years ago by
davis
▴ 90
3
votes
2
replies
1.8k
views
Cannot use color/ fill arguments outside of aes() in ggbio karyogram layout
ggbio
8.7 years ago
Mario Saare
▴ 20
0
votes
2
replies
1.3k
views
puzzling ggbio behaviour when plotting a detail of a track
ggbio
updated 8.7 years ago by
James W. MacDonald
67k • written 8.7 years ago by
Philip Lijnzaad
▴ 160
2
votes
3
replies
2.5k
views
No color support in ggbio for autoplot
ggbio
autoplot
color
vignette
updated 8.8 years ago by
aaron
▴ 10 • written 8.8 years ago by
timothypyork
• 0
1
vote
4
replies
2.6k
views
Cannot get ggbio autoplot to run successfully on R 3.2 (3.2.2 or 3.2.3)
ggbio
ggplot2
autoplot
bioconductor
gene models
updated 8.8 years ago by
snf
▴ 10 • written 8.8 years ago by
danhovelson
▴ 10
50 results • Page
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Comment: SingleR Label.Ont
by
Leslie
• 0
wqeo oqwe owqeoweqo weqooqwe owqe o qweoq we
Comment: Question about using LRT test for time course experiments with DESeq2
by
James W. MacDonald
67k
An LRT has nothing to do with any contrast, but instead is comparing the model fit with and without certain coefficients. So if you do ``…
Comment: Question about using LRT test for time course experiments with DESeq2
by
Denise
• 0
Hi, Unfortunately, I don't know anyone who could help me with this particular question. Would calling the results() function with a cont…
Comment: limma technical repeat correction
by
john
• 0
Hi @gordonsmyth, Thank you very much for the clarification, including the details about lmer() and for confirming that the original analysi…
Comment: Error: 'term_similarity_from_KEGG' not found in simplifyEnrichment package
by
James W. MacDonald
67k
And this is [documented in the NEWS file][1]. [1]: https://bioconductor.org/packages/release/bioc/news/simplifyEnrichment/NEWS
Votes
Comment: limma technical repeat correction
Comment: What is the correct use of removeBatchEffect's design parameter
Comment: Analysis of 2*4 factorial design
Answer: How does one test for interactions in EdgeR?
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