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fasta
•
reset
0
votes
2
replies
925
views
convert sequences disambiguated with DECIPHER back to FASTA
DECIPHER
FASTA
disambiguate
written 4.0 years ago by
joannew
• 0
0
votes
0
replies
662
views
Read the first sequence from fasta file - TFBSTool
TFBSTools
FASTA
RStudio
2.6 years ago
HELEN
• 0
0
votes
4
replies
3.2k
views
transformation of csv file to fasta format with biostrings and r studio
DNASeq
rstudio
fasta
Biostrings
csv
2.8 years ago
HELEN
• 0
1
vote
0
replies
841
views
Introduce mutations into sequence using HGVS SVN based nomenclature
HGVS
mutation
variant
fasta
2.8 years ago
Endre Sebestyén
▴ 70
0
votes
1
reply
718
views
How to get similarity score between two genomes of different species
fasta
multi-species
3.7 years ago
drew.neely
• 0
0
votes
0
replies
727
views
Working with fasta files in sangerseqR
Fasta
Ab1
Abif
Scf
3.7 years ago
dh.heredero
▴ 10
6
votes
8
replies
2.8k
views
Ranges from a fasta file
biostrings
fasta
genomicranges
granges
updated 5.3 years ago by
Martin Morgan
25k • written 5.3 years ago by
Konstantinos Yeles
▴ 80
3
votes
3
replies
1.4k
views
Bug in rtracklayer::import of amino acid fasta sequences
rtracklayer
fasta
import
Biostrings
updated 5.4 years ago by
Michael Lawrence
★ 11k • written 5.4 years ago by
k.vitting.seerup
▴ 120
0
votes
2
replies
5.3k
views
Converting Fastq to Fasta in R
R
Bioinformatics
Fastq
Fasta
updated 5.4 years ago by
James W. MacDonald
66k • written 5.4 years ago by
christinafragel
• 0
0
votes
0
replies
900
views
Quantifying reporter expression to validate sequencing
alignment
Fastq
fasta
5.6 years ago
A
▴ 40
0
votes
16
replies
4.5k
views
Error while using buildindex for human genome
rsubread
buildindex
fasta
alignment
5.6 years ago
writetoroopali
• 0
0
votes
0
replies
1.5k
views
How to extract SNPs from multiple alignment fasta file?
snp
multiple sequence alignment
fasta
Tutorial
updated 5.7 years ago by
Martin Morgan
25k • written 5.7 years ago by
pltbiotech_tkarthi
• 0
0
votes
0
replies
1.1k
views
filter and trim large fasta/bam files
deep sequencing
fasta
bam
trim
6.7 years ago
achaillon
• 0
2
votes
3
replies
2.1k
views
Exporting a FASTA file from a getBM vs getSequence query
biomart
fasta
updated 6.8 years ago by
James W. MacDonald
66k • written 6.8 years ago by
Glubbdrubb
• 0
8
votes
14
replies
11k
views
Using msa msaPrettyPrint(): saving multiple alignement fasta file
msa
msaprettyprint()
fasta
updated 7.0 years ago by
tongtong.wang1210
• 0 • written 7.4 years ago by
Olorin
▴ 50
2
votes
4
replies
1.4k
views
convert a sequence to Ranges object
iranges
fasta
split
updated 7.4 years ago by
Michael Lawrence
★ 11k • written 7.4 years ago by
Assa Yeroslaviz
★ 1.5k
1
vote
2
replies
3.1k
views
Perform a function on several FASTA files R (Biostrings) Error in Call2(new_input_ExternalFilePtr", fp, PACKAGE = "Biostrings")
biostrings
fasta
R
Call2
updated 7.4 years ago by
Martin Morgan
25k • written 7.4 years ago by
kevin.debray
• 0
1
vote
2
replies
2.2k
views
Wrong protein sequence fetched with R's Biostrings readDNAStringSet function
biostrings
fasta
protein
updated 7.4 years ago by
James W. MacDonald
66k • written 7.4 years ago by
fastabest
• 0
0
votes
5
replies
1.4k
views
Splitting a fasta file based on specific Amino acid for plotting
iranges
biostrings
fasta
protein
readaastringset
updated 7.7 years ago by
Michael Lawrence
★ 11k • written 7.7 years ago by
Assa Yeroslaviz
★ 1.5k
2
votes
1
reply
1.6k
views
export BSgenome directly in gzipped fasta
bsgenome
gzip
fasta
updated 8.2 years ago by
Jeff Johnston
▴ 90 • written 8.2 years ago by
TimothéeFlutre
▴ 80
0
votes
5
replies
2.9k
views
DNAString: Standard checksum function?
Biostrings
FASTA
sequencing
8.3 years ago • updated 5 weeks ago
Henrik Bengtsson
★ 2.4k
0
votes
1
reply
1.5k
views
vmatchpattern with indexed fasta files
fasta
fai
vmatchpattern
biostrings
updated 8.4 years ago by
Hervé Pagès
16k • written 8.6 years ago by
giuliobarth
• 0
4
votes
3
replies
3.8k
views
a package for read.fasta
seqinr
fasta
updated 8.8 years ago by
Hervé Pagès
16k • written 8.8 years ago by
Angel
▴ 40
2
votes
0
replies
3.4k
views
News:
Gencode GFF3 and FASTA files now available via AnnotationHub
AnnotationHub
Gencode
GFF3
FASTA
News
8.8 years ago
Sonali Arora
▴ 390
2
votes
4
replies
1.9k
views
customProDB: error aberrant fasta from indels
indel
customprodb
fasta
variantannotation
updated 8.9 years ago by
xiaojing.wang
▴ 50 • written 8.9 years ago by
kristenbeck527
• 0
2
votes
2
replies
1.9k
views
BLAST export library 'annotate'
blast
annotate
biostrings
export
fasta
9.6 years ago
b.stielow
• 0
26 results • Page
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Comment: error loading collectTRI regulon
by
silvaesilva.da
• 0
Fantastic. Thank you very much. Everything has been sorted out
Answer: DESeq2 returns results for group with just one replicate
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James W. MacDonald
66k
There is no problem having only one replicate per group, so long as you have replicates for other groups. The degrees of freedom are based …
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by
Masongeorge
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Thanks for this post. i found it helpful for my own issue that was occurring on the backend of this page.
Comment: error loading collectTRI regulon
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deeenes
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I fixed the original, Ensembl HTTP 403 error only now, [see here][1]. If you've seen it gone earlier today, only shows that this error appe…
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by
James W. MacDonald
66k
Ideally you would use something better than gene symbols for this. I realize that biologists like gene symbols, but they are really terribl…
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Comment: error loading collectTRI regulon
A: Scaling option in fastMNN
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
A: How to do a confounding variable adjustment without using the treatment informat
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