Showing : genomes • reset
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Job: Bioinformatics Research Associate in Transcriptomics, Epigenomics and Multi-omics
genomes
6 months ago JP Carter ▴ 40
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0
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372
views
Job: Bioinformatics Research Associate, Genomics and Genetics
genomes Genetics
6 months ago JP Carter ▴ 40
1
vote
1
reply
422
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MSc student
genomes
updated 16 months ago by ▴ 780 • written 16 months ago by • 0
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2
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2.6k
views
How to get the rsID of 4 million SNPA
ensembldb SNP SNPData genomes
written 2.2 years ago by • 0
0
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0
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852
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How to assign custom colour codes for Multiple sequence alignment (MSA)?
Phylogenetics genomes R MultipleSequenceAlignment Bioconductor
2.8 years ago • updated 2.7 years ago K. • 0
1
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0
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1.4k
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Job: Bioinformatician/Computational Biologist - Dublin City, Ireland
bioinformatician job computational biology genomes pathways machine learning Job
6.6 years ago bulfin.triona ▴ 10
0
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0
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986
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How to generate CpG island Unmasked.bed file format for finding CpG island shores and shelves?
bioconductor annotation rtracklayer genomes homo.sapiens
6.9 years ago sivabala76 • 0
0
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5
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1.4k
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Extracting all possible annotations between two genomic coordinates
genomes
7.2 years ago KB ▴ 50
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1.1k
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vizualization of mutations
genomes SNP
7.7 years ago Bogdan ▴ 670
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0
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1.7k
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Job: Postdoc / Computational Biologist for circulating tumor DNA/RNA profiling at Memorial Sloan Kettering Cancer Center MSKCC, New York
cancer sequencing genetics genomes diagnostic Job
7.7 years ago dtlabmskcc • 0
1
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1
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1.7k
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GenomeViz
Proteomics genomes Proteomics genomes
updated 8.3 years ago by • 0 • written 19.3 years ago by ▴ 80
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1
reply
1.2k
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Request: Add Macaca fascicularis genome to BSgenome
bsgenome genomes
updated 9.0 years ago by 16k • written 9.0 years ago by • 0
0
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0
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1.6k
views
Job: Harvard Medical School: Postdoctoral Opportunity
genomes Job
9.6 years ago Doe, Aimee ▴ 40
0
votes
8
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2.8k
views
Best practices to find intersection among variants
VariantAnnotation genomes VariantAnnotation VariantAnnotation genomes VariantAnnotation
updated 9.7 years ago by ★ 1.3k • written 9.7 years ago by ▴ 220
2
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3
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5.1k
views
Linkage disequilibrium with 1000 Genomes/HapMap
HapMap genomes HapMap genomes
9.8 years ago enricoferrero ▴ 660
0
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3
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1.5k
views
Elephant shark genome
Biostrings genomes Biostrings genomes
updated 10.1 years ago by 25k • written 10.1 years ago by ★ 13k
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1
reply
2.1k
views
It works! RE: So close, but still error: RE: Rsamtools filtering bam file: RE: MEDIPS.createSet error
Alignment GO Cancer BSgenome BSgenome Rsamtools genomes MEDIPS Alignment GO Cancer
updated 10.1 years ago by ▴ 570 • written 10.1 years ago by ▴ 220
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1
reply
1.5k
views
GOseq with ce6
GO Yeast Organism goseq genomes GO Yeast Organism goseq genomes
updated 10.1 years ago by ▴ 310 • written 10.1 years ago by ▴ 50
0
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0
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1.5k
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Trying to use BSgenome.Hsapiens.NCBI.GRCh38
Cancer BSgenome BSgenome genomes Cancer BSgenome BSgenome genomes
10.1 years ago Hervé Pagès 16k
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1
reply
1.8k
views
So close, but still error: RE: Rsamtools filtering bam file: RE: MEDIPS.createSet error
Alignment GO Cancer BSgenome BSgenome Rsamtools genomes MEDIPS Alignment GO Cancer
updated 10.1 years ago by ▴ 570 • written 10.1 years ago by ▴ 220
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5
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2.0k
views
Rsamtools filtering bam file: RE: MEDIPS.createSet error
GO BSgenome BSgenome Rsamtools genomes MEDIPS GO BSgenome BSgenome Rsamtools genomes
updated 10.1 years ago by 25k • written 10.1 years ago by ▴ 220
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3
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2.0k
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Find enriched GO terms, given a list of GO terms of interest and background GO terms
Annotation GO topGO genomes Annotation GO topGO genomes
10.3 years ago Guest User ★ 13k
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1
reply
1.7k
views
makeTranscriptDbFromUCSC() error
genomes genomes
10.3 years ago Chris Cabanski ▴ 30
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2
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2.2k
views
ensemblVEP, variant_effect_predictor versions and release schedule
Transcription HapMap PolyPhen SIFT convert genomes ensemblVEP Transcription HapMap SIFT
updated 10.3 years ago by ★ 6.8k • written 10.4 years ago by ▴ 30
0
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1
reply
2.3k
views
Pairwise Alignment on Large Protein Sequence Data Set
Alignment genomes Alignment genomes
updated 10.4 years ago by 16k • written 10.4 years ago by ★ 13k
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0
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1.5k
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Gviz and Leishmania genomes
rtracklayer genomes Gviz rtracklayer genomes Gviz
10.5 years ago florian.hahne@novartis.com ★ 1.6k
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1.8k
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Create a sample file /tab delimited file in QuasR
BSgenome convert BSgenome genomes QuasR BSgenome convert BSgenome genomes QuasR
10.5 years ago Michael Stadler ▴ 350
0
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1
reply
1.6k
views
makeTranscriptDbFromGFF fails on NCBI Bacteria genomes
GO TranscriptDb goseq genomes GO TranscriptDb goseq genomes
updated 10.6 years ago by ★ 7.2k • written 10.6 years ago by ▴ 80
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1
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1.5k
views
Lifting over a bam file with Rsamtools and GenomicRanges
GenomicRanges genomes GenomicRanges genomes
updated 10.7 years ago by ★ 11k • written 10.7 years ago by ★ 13k
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1.2k
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SnpStats - STRING_ELT() error and Fst
genomes genomes
10.7 years ago Voke AO ▴ 760
0
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1
reply
1.3k
views
Working with non-type strain annotation
Proteomics GO genomes Proteomics GO genomes
updated 11.0 years ago by ★ 7.2k • written 11.0 years ago by ▴ 70
0
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8
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3.2k
views
QuasR: how to use an indexed reference genome?
BSgenome BSgenome genomes QuasR BSgenome BSgenome genomes QuasR
updated 11.0 years ago by ▴ 350 • written 11.0 years ago by ▴ 750
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2
replies
1.6k
views
QuasR special case alignment
Alignment genomes QuasR Alignment genomes QuasR
updated 11.0 years ago by ▴ 340 • written 11.0 years ago by ▴ 350
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6
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1.6k
views
coverage on very large ReadGappedAlignmentsObject
Coverage genomes Coverage genomes
updated 11.0 years ago by 25k • written 11.0 years ago by ▴ 360
0
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1
reply
1.9k
views
Help needed! What wrong with VariantAnnotation and TCGA vcfs
VariantAnnotation genomes VariantAnnotation VariantAnnotation genomes VariantAnnotation
updated 11.1 years ago by 25k • written 11.1 years ago by ▴ 340
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0
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1.5k
views
Useful information about Ensembl release 71 mart databases
zebrafish PolyPhen SIFT affy genomes zebrafish PolyPhen SIFT affy genomes
11.1 years ago Thomas Maurel ▴ 800
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1.4k
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Biostatistician position in London
Cancer genomes Cancer genomes
11.1 years ago Kathi Zarnack ▴ 110
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2
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1.5k
views
Limit on number of sequence files for forging a BSgenome
GO Cancer BSgenome BSgenome genomes GO Cancer BSgenome BSgenome genomes
11.1 years ago Hervé Pagès 16k
3
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4
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1.2k
views
Limit on number of sequence files for forging a BSgenome
BSgenome BSgenome genomes BSgenome BSgenome genomes
updated 11.1 years ago by ★ 6.5k • written 11.1 years ago by ▴ 220
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2
replies
1.0k
views
Expected value of finding a sequence (Tim Smith)
genomes genomes
updated 11.2 years ago by ▴ 10 • written 11.2 years ago by ▴ 80
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0
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1.3k
views
Help with Gviz \"IdeogramTrack\" and \"BioMartGeneTrackRegion\" commands
zebrafish biomaRt ideogram genomes zebrafish biomaRt ideogram genomes
11.3 years ago florian.hahne@novartis.com ★ 1.6k
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1.2k
views
Useful information about Ensembl release 70 mart databases
genomes genomes
11.3 years ago Thomas Maurel ▴ 800
0
votes
3
replies
1.3k
views
VCF predictCoding(...) providing inconsistent results?
genomes genomes
11.3 years ago Murat Tasan ▴ 70
0
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3
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2.3k
views
seqlevels in VCF objects
BSgenome BSgenome genomes BSgenome BSgenome genomes
updated 11.3 years ago by ★ 6.8k • written 11.3 years ago by ▴ 70
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2
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1.2k
views
Granges averaging
genomes genomes
updated 11.6 years ago by 16k • written 11.6 years ago by ▴ 40
0
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2
replies
1.6k
views
VariantAnnotation: readVcf on nonmodel organism
Organism genomes Organism genomes
updated 11.6 years ago by ★ 6.8k • written 11.6 years ago by ▴ 40
0
votes
2
replies
1.6k
views
Building custom genome in MeDIPS
BSgenome BSgenome genomes MEDIPS BSgenome BSgenome genomes MEDIPS
updated 11.7 years ago by 65k • written 11.7 years ago by ▴ 10
0
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0
replies
1.1k
views
regarding mapping package
Cancer genomes Rsubread gmapR Cancer genomes Rsubread gmapR
11.7 years ago Martin Morgan 25k
0
votes
1
reply
983
views
How to use cutome reference genome?
BSgenome BSgenome genomes MEDIPS BSgenome BSgenome genomes MEDIPS
updated 11.7 years ago by ★ 6.5k • written 11.7 years ago by ★ 13k
0
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0
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1.3k
views
Job: Research Associate in Bioinformatics, Cambridge, UK
Sequencing genomes Sequencing genomes
11.7 years ago Krys Kelly ▴ 270
50 results • Page 1 of 1
Recent ...
Replies
Comment: Ensembl plants at annotationHub? by Daniele • 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0
Thanks a lot!
Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150
Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by Matthew Thornton ▴ 360
So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!
Votes
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
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