Showing : Pathways • reset
3
votes
1
reply
858
views
Difference between enrichGO results and Enrichr website results
Pathways GO.db clusterProfiler
updated 4 months ago by ★ 4.1k • written 4 months ago by ▴ 10
1
vote
9
replies
1.3k
views
Most enriched pathway is not expressed when modifying universe parameter
DESeq2 clusterProfiler Pathways RNASeq org.Mm.eg.db
updated 5 months ago by 67k • written 5 months ago by ▴ 10
2
votes
3
replies
785
views
How many of my genes from my gene list are in each KEGG pathway?
Pathways clusterProfiler gseKEGG KEGG
updated 8 days ago by • 0 • written 7 months ago by • 0
0
votes
11
replies
2.4k
views
globaltest question
Pathways probe affy Pathways probe affy
written 18.2 years ago by ▴ 30
0
votes
0
replies
589
views
Job: Postdoc for computational biology on cancer omics data analysis at Liang lab of Wistar Institute, Philadelphia, US
omics cancerdata Pathways
10 months ago omicsresearch • 0
0
votes
1
reply
669
views
topGO() analysis of DMPs in missMethyl methylation analysis
DNAMethylation missMethyl Pathways
19 months ago Grace • 0
0
votes
0
replies
683
views
Changing pathway names in pathway analysis
pathways Pathways
22 months ago Katharina • 0
0
votes
0
replies
824
views
Job: EPA Postdoctoral Fellowship in Bioinformatics and Computational Toxicology
MethylSeq Transcriptomics Pathways Epigenetics RNASeq
2.0 years ago whduke • 0
0
votes
0
replies
957
views
Pathway Analysis using GAGE
gage RNASeq gageData Pathways
2.6 years ago OST • 0
1
vote
2
replies
1.0k
views
Pathway analysis of RNAseq data using goseq package
Pathways goseq RNASeqData
2.7 years ago • updated 2.6 years ago m.glymenaki • 0
0
votes
6
replies
4.3k
views
extracting the KEGG pathway for a set of genes
Pathways KEGG
3.3 years ago Bogdan ▴ 670
0
votes
4
replies
5.8k
views
Pheatmap/Complexheatmap: making a continuous color scale with NAs
R Pathways pheatmap limma
updated 3.7 years ago by ▴ 350 • written 3.7 years ago by ▴ 10
1
vote
1
reply
1.3k
views
News: SBGNview: Data Analysis, Integration and Visualization on 5000+ Pathways/3000+ Species
SBGNview pathways SBGNview.data pathview visualization
3.7 years ago Luo Weijun ★ 1.6k
2
votes
0
replies
1.1k
views
Saving the results of the topGO package as an R object (rda/rds file).
RNASeq GO topGO Pathways
3.8 years ago Ben ▴ 50
2
votes
2
replies
1.3k
views
Pathway analysis and GO terms analysis with goseq
KEGG Pathways GO goseq
updated 4.0 years ago by 67k • written 4.0 years ago by • 0
2
votes
1
reply
2.6k
views
pre-filtering gene sets for GSVA/ssGSEA
gsea ssgsea gsva pathways
updated 4.4 years ago by ★ 3.4k • written 4.4 years ago by ▴ 50
0
votes
1
reply
2.1k
views
KEGGREST keggGet fails to retrieve modules, but not pathways
keggrest software error pathways modules kegg
updated 4.6 years ago by 25k • written 4.6 years ago by • 0
0
votes
4
replies
1.2k
views
Fonction of genes/metabolites in a pathway?
gene metabolite functionnal annotation pathways
updated 4.7 years ago by ★ 4.0k • written 4.7 years ago by • 0
0
votes
0
replies
958
views
plotting Signalling Pathways using SPIA
SPIA functional-analysis Pathways KEGG
4.7 years ago Assa Yeroslaviz ★ 1.5k
2
votes
2
replies
1.1k
views
Help for Research Proposal
drug development pathways bioinformatics
updated 6.0 years ago by ★ 13k • written 6.0 years ago by • 0
0
votes
0
replies
1.1k
views
Pathview input error: non-numeric variable in data frame
pathview kegg pathways package
6.1 years ago anc.informatics • 0
0
votes
0
replies
770
views
Interactive metabolic pathway
pathways
6.3 years ago pritim2k6 • 0
0
votes
1
reply
1.1k
views
Protein pathway analysis -- Classify, organize, and cluster a list of proteins / discovering relations between a set of proteins and linking them to …
protein disease pathway analysis pathways
6.3 years ago ረ • 0
0
votes
0
replies
900
views
Could not find pathways in HSA gmt
pathways gmt
6.5 years ago flalix • 0
0
votes
5
replies
6.5k
views
clusterProfiler: exclude pathways and add gene names to cnetplot
clusterprofiler pathway analysis pathways
updated 2.1 years ago by • 0 • written 6.5 years ago by ▴ 20
2
votes
4
replies
2.6k
views
ReactomePA / Reactome: Extraction of genes within a term
pathways reactomepa functional annotation
updated 6.5 years ago by ★ 1.2k • written 6.5 years ago by • 0
0
votes
0
replies
1.2k
views
Pathview web - unable to map transcriptomic data
pathways high-throughput transcriptomics nonmodel species
6.6 years ago monteiro • 0
0
votes
0
replies
1.1k
views
igraph PoTRA error
graph pathways igraph
6.7 years ago genomic8328 ▴ 10
2
votes
1
reply
2.1k
views
Pathview graph with multiple states/samples or time series
Pathways graph Pathways graph
updated 6.8 years ago by • 0 • written 11.1 years ago by ★ 1.6k
0
votes
0
replies
1.3k
views
Two questions about pathifier package
pathways statistics microarray
6.9 years ago arronar • 0
1
vote
0
replies
1.6k
views
Job: Bioinformatician/Computational Biologist - Dublin City, Ireland
bioinformatician job computational biology genomes pathways machine learning Job
7.1 years ago bulfin.triona ▴ 10
0
votes
1
reply
2.1k
views
GAGE or GSEABase using expression data and pathway.gmt file for mouse
R GSEA GAGE pathways
updated 7.6 years ago by ★ 1.6k • written 7.6 years ago by • 0
0
votes
1
reply
2.3k
views
Pathview: visualization of data
pathways
updated 7.7 years ago by ★ 1.6k • written 7.7 years ago by • 0
0
votes
0
replies
1.4k
views
Pathway analysis for diffrential express gene
pathways gage annotation gostats
7.7 years ago avinash gupta ▴ 130
0
votes
0
replies
1.5k
views
Job: PhD student positions in the areas of Bioinformatics, Computer Science and Biostatistics
bioinformatician job phd R pathways Job
7.9 years ago Frank Kramer ▴ 60
0
votes
6
replies
1.7k
views
Is reactome.db still updated?
reactome.db annotation pathways
8.1 years ago Guido Hooiveld ★ 4.1k
0
votes
4
replies
2.2k
views
EGSEA: how does the program generate the value for the up or down regulation of gene sets or pathways
pathways gsea egsea gage
updated 8.2 years ago by ▴ 40 • written 8.2 years ago by • 0
2
votes
0
replies
1.5k
views
Job: PhD student positions in the areas of Bioinformatics, Computer Science and Biostatistics
bioinformatician job job phd R pathways Job
8.2 years ago Frank Kramer ▴ 60
0
votes
2
replies
2.9k
views
WGCNA - Using real data for tutorial III
pathways wgcna network rna-seq
8.9 years ago hywel.williams • 0
2
votes
3
replies
5.3k
views
Pathview None of the genes or compounds mapped to the pathway
pathview pathways KEGG empty map
updated 3.3 years ago by • 0 • written 8.9 years ago by ▴ 20
2
votes
1
reply
1.3k
views
Problem with data not found using pathview package
pathways
updated 9.5 years ago by 67k • written 9.5 years ago by • 0
8
votes
14
replies
4.2k
views
reactome.db is not updated?
genesetenrichment pathways reactome.db
updated 9.6 years ago by ▴ 150 • written 10.0 years ago by ★ 1.2k
1
vote
15
replies
3.9k
views
reactome.db: reactome IDs not mapped to pathway names
annotation pathways
updated 9.6 years ago by ▴ 150 • written 10.0 years ago by ★ 2.1k
0
votes
2
replies
1.9k
views
retrieve kegg pathway abundances from gage analysis
gage pathways kegg
updated 9.7 years ago by ★ 1.6k • written 9.7 years ago by ▴ 100
0
votes
13
replies
6.4k
views
gage pathways enrichment analysis
gage pathways kegg
updated 10.0 years ago by ★ 1.6k • written 10.0 years ago by ▴ 100
0
votes
2
replies
4.8k
views
Pathway enrichment in bacteria metagenomes
pathways metagenomics
updated 10.0 years ago by ★ 1.6k • written 10.0 years ago by ▴ 100
0
votes
0
replies
2.4k
views
Gostats Hypergeometric tests for non model organisms Kegg pathway
Pathways GO Organism GOstats
10.2 years ago Luo Weijun ★ 1.6k
0
votes
0
replies
1.8k
views
Gostats Hypergeometric tests for non model organisms Kegg pathway
Pathways GO Organism GOstats
10.2 years ago Guest User ★ 13k
0
votes
0
replies
1.7k
views
Error in keggPathwayGraphs when updateCache = TRUE
Pathways ROntoTools Pathways ROntoTools
10.3 years ago Guest User ★ 13k
0
votes
0
replies
1.4k
views
ISMB talks: Pathview for pathway-based data integration and visualization
Pathways Visualization pathview Pathways Visualization pathview
10.4 years ago Luo Weijun ★ 1.6k
50 results • Page 1 of 1
Recent ...
Replies
Answer: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://diendannhansu.com/threads/hayal-sohbet-odalari.667004/ https://forum.realdigital.org/u/serkan https://animefagos.com/miembros/ser…
Comment: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://www.hayalsohbet.net https://www.yerlichat.com https://www.yerlichat.net https://www.mavisim.net https://www.hayalchat.com http…
Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data by Melisa Tecik • 0
Thanks a lot for the help. You saved my day
Answer: Differene between the Wald and LRT test for time-series gene expression data by James W. MacDonald 67k
The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…
Votes
Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
Answer: Allele frequencies for ALL alleles of one SNP ?
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Using Affymetrix Custom Array
Awards • All
Popular Question to Fred Hutch (Recruiting) ▴ 40
Scholar to Gordon Smyth 51k
Popular Question to chase.mateusiak • 0
Scholar to James W. MacDonald 67k
Popular Question to JennyS • 0
Locations • All
United States, 3 minutes ago
Spain, 5 minutes ago
Denmark, 6 minutes ago
France, 43 minutes ago
Belgium, 1 hour ago
Traffic: 751 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6