Showing : Pathways • reset
1
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4
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467
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pathview - multiple states
pathview Pathways KEGG
12 weeks ago Philippine • 0
3
votes
1
reply
1.4k
views
Difference between enrichGO results and Enrichr website results
Pathways GO.db clusterProfiler
updated 8 months ago by ★ 4.1k • written 8 months ago by ▴ 10
1
vote
9
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2.0k
views
Most enriched pathway is not expressed when modifying universe parameter
DESeq2 clusterProfiler Pathways RNASeq org.Mm.eg.db
updated 8 months ago by 68k • written 8 months ago by ▴ 10
2
votes
3
replies
1.2k
views
How many of my genes from my gene list are in each KEGG pathway?
Pathways clusterProfiler gseKEGG KEGG
updated 3 months ago by • 0 • written 10 months ago by • 0
0
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11
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2.6k
views
globaltest question
Pathways probe affy Pathways probe affy
written 18.5 years ago by ▴ 30
0
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0
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666
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Job: Postdoc for computational biology on cancer omics data analysis at Liang lab of Wistar Institute, Philadelphia, US
omics cancerdata Pathways
13 months ago omicsresearch • 0
0
votes
1
reply
756
views
topGO() analysis of DMPs in missMethyl methylation analysis
DNAMethylation missMethyl Pathways
22 months ago Grace • 0
0
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0
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766
views
Changing pathway names in pathway analysis
pathways Pathways
2.1 years ago Katharina • 0
0
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0
replies
884
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Job: EPA Postdoctoral Fellowship in Bioinformatics and Computational Toxicology
MethylSeq Transcriptomics Pathways Epigenetics RNASeq
2.3 years ago whduke • 0
0
votes
0
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1.0k
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Pathway Analysis using GAGE
gage RNASeq gageData Pathways
2.9 years ago OST • 0
1
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2
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1.1k
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Pathway analysis of RNAseq data using goseq package
Pathways goseq RNASeqData
3.0 years ago • updated 2.9 years ago m.glymenaki • 0
0
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6
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5.0k
views
extracting the KEGG pathway for a set of genes
Pathways KEGG
3.6 years ago Bogdan ▴ 670
0
votes
4
replies
6.3k
views
Pheatmap/Complexheatmap: making a continuous color scale with NAs
R Pathways pheatmap limma
updated 3.9 years ago by ▴ 360 • written 3.9 years ago by ▴ 10
1
vote
1
reply
1.4k
views
News: SBGNview: Data Analysis, Integration and Visualization on 5000+ Pathways/3000+ Species
SBGNview pathways SBGNview.data pathview visualization
4.0 years ago Luo Weijun ★ 1.6k
2
votes
0
replies
1.2k
views
Saving the results of the topGO package as an R object (rda/rds file).
RNASeq GO topGO Pathways
4.1 years ago Ben ▴ 50
2
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2
replies
1.4k
views
Pathway analysis and GO terms analysis with goseq
KEGG Pathways GO goseq
updated 4.2 years ago by 68k • written 4.2 years ago by • 0
2
votes
1
reply
2.9k
views
pre-filtering gene sets for GSVA/ssGSEA
gsea ssgsea gsva pathways
updated 4.6 years ago by ★ 3.4k • written 4.6 years ago by ▴ 50
0
votes
1
reply
2.3k
views
KEGGREST keggGet fails to retrieve modules, but not pathways
keggrest software error pathways modules kegg
updated 4.9 years ago by 25k • written 4.9 years ago by • 0
0
votes
4
replies
1.3k
views
Fonction of genes/metabolites in a pathway?
gene metabolite functionnal annotation pathways
updated 4.9 years ago by ★ 4.0k • written 4.9 years ago by • 0
0
votes
0
replies
1.0k
views
plotting Signalling Pathways using SPIA
SPIA functional-analysis Pathways KEGG
5.0 years ago Assa Yeroslaviz ★ 1.5k
2
votes
2
replies
1.2k
views
Help for Research Proposal
drug development pathways bioinformatics
updated 6.2 years ago by ★ 13k • written 6.2 years ago by • 0
0
votes
0
replies
1.2k
views
Pathview input error: non-numeric variable in data frame
pathview kegg pathways package
6.4 years ago anc.informatics • 0
0
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0
replies
811
views
Interactive metabolic pathway
pathways
6.5 years ago pritim2k6 • 0
0
votes
1
reply
1.2k
views
Protein pathway analysis -- Classify, organize, and cluster a list of proteins / discovering relations between a set of proteins and linking them to …
protein disease pathway analysis pathways
6.6 years ago ረ • 0
0
votes
0
replies
952
views
Could not find pathways in HSA gmt
pathways gmt
6.7 years ago flalix • 0
0
votes
5
replies
6.9k
views
clusterProfiler: exclude pathways and add gene names to cnetplot
clusterprofiler pathway analysis pathways
updated 2.3 years ago by • 0 • written 6.8 years ago by ▴ 20
2
votes
4
replies
2.7k
views
ReactomePA / Reactome: Extraction of genes within a term
pathways reactomepa functional annotation
updated 6.8 years ago by ★ 1.2k • written 6.8 years ago by • 0
0
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0
replies
1.3k
views
Pathview web - unable to map transcriptomic data
pathways high-throughput transcriptomics nonmodel species
6.9 years ago monteiro • 0
0
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0
replies
1.2k
views
igraph PoTRA error
graph pathways igraph
7.0 years ago genomic8328 ▴ 10
2
votes
1
reply
2.2k
views
Pathview graph with multiple states/samples or time series
Pathways graph Pathways graph
updated 7.1 years ago by • 0 • written 11.4 years ago by ★ 1.6k
0
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0
replies
1.4k
views
Two questions about pathifier package
pathways statistics microarray
7.1 years ago arronar • 0
1
vote
0
replies
1.7k
views
Job: Bioinformatician/Computational Biologist - Dublin City, Ireland
bioinformatician job computational biology genomes pathways machine learning Job
7.4 years ago bulfin.triona ▴ 10
0
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1
reply
2.2k
views
GAGE or GSEABase using expression data and pathway.gmt file for mouse
R GSEA GAGE pathways
updated 7.8 years ago by ★ 1.6k • written 7.8 years ago by • 0
0
votes
1
reply
2.4k
views
Pathview: visualization of data
pathways
updated 8.0 years ago by ★ 1.6k • written 8.0 years ago by • 0
0
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0
replies
1.4k
views
Pathway analysis for diffrential express gene
pathways gage annotation gostats
8.0 years ago avinash gupta ▴ 130
0
votes
0
replies
1.6k
views
Job: PhD student positions in the areas of Bioinformatics, Computer Science and Biostatistics
bioinformatician job phd R pathways Job
8.2 years ago Frank Kramer ▴ 60
0
votes
6
replies
1.8k
views
Is reactome.db still updated?
reactome.db annotation pathways
8.4 years ago Guido Hooiveld ★ 4.1k
0
votes
4
replies
2.3k
views
EGSEA: how does the program generate the value for the up or down regulation of gene sets or pathways
pathways gsea egsea gage
updated 8.4 years ago by ▴ 40 • written 8.4 years ago by • 0
2
votes
0
replies
1.6k
views
Job: PhD student positions in the areas of Bioinformatics, Computer Science and Biostatistics
bioinformatician job job phd R pathways Job
8.4 years ago Frank Kramer ▴ 60
0
votes
2
replies
3.0k
views
WGCNA - Using real data for tutorial III
pathways wgcna network rna-seq
9.1 years ago hywel.williams • 0
2
votes
3
replies
5.5k
views
Pathview None of the genes or compounds mapped to the pathway
pathview pathways KEGG empty map
updated 3.6 years ago by • 0 • written 9.2 years ago by ▴ 20
2
votes
1
reply
1.3k
views
Problem with data not found using pathview package
pathways
updated 9.8 years ago by 68k • written 9.8 years ago by • 0
8
votes
14
replies
4.5k
views
reactome.db is not updated?
genesetenrichment pathways reactome.db
updated 9.9 years ago by ▴ 150 • written 10.3 years ago by ★ 1.2k
1
vote
15
replies
4.1k
views
reactome.db: reactome IDs not mapped to pathway names
annotation pathways
updated 9.9 years ago by ▴ 150 • written 10.3 years ago by ★ 2.1k
0
votes
2
replies
2.0k
views
retrieve kegg pathway abundances from gage analysis
gage pathways kegg
updated 10.0 years ago by ★ 1.6k • written 10.0 years ago by ▴ 100
0
votes
13
replies
6.6k
views
gage pathways enrichment analysis
gage pathways kegg
updated 10.2 years ago by ★ 1.6k • written 10.3 years ago by ▴ 100
0
votes
2
replies
5.0k
views
Pathway enrichment in bacteria metagenomes
pathways metagenomics
updated 10.3 years ago by ★ 1.6k • written 10.3 years ago by ▴ 100
0
votes
0
replies
2.5k
views
Gostats Hypergeometric tests for non model organisms Kegg pathway
Pathways GO Organism GOstats
10.5 years ago Luo Weijun ★ 1.6k
0
votes
0
replies
1.9k
views
Gostats Hypergeometric tests for non model organisms Kegg pathway
Pathways GO Organism GOstats
10.5 years ago Guest User ★ 13k
0
votes
0
replies
1.7k
views
Error in keggPathwayGraphs when updateCache = TRUE
Pathways ROntoTools Pathways ROntoTools
10.6 years ago Guest User ★ 13k
50 results • Page 1 of 1
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Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k
No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…
Answer: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k
I strongly recommend to not concern yourself with these sorts of marginal problems because you're entering a realm in which you're entirely…
Comment: Problem using locateVariants() from the VariantAnnotation package by Marco • 0
Ok, I think I found the problem. By looking at the `locateVariants()` source code, I was able to pinpoint that the problems is when trying …
Comment: Conumee for EPIC and EPICv2 copy number by Adam • 0
As described on the [github](https://github.com/hovestadtlab/conumee2) the way to do this is using array_type = c("EPIC", "EPICv2") This i…
Comment: graper 1.22 Build is Broken by shepherl 4.1k
This is not an appropriate place to report this. this is for usage questions. maintainers are notified automatically when it is failing on …
Votes
A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
Answer: Vertical line at A=0, nothing else, on MA plot
Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
Answer: Group-specific condition effects with individuals nested: matrix is not full ra
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