Showing : Pathways • reset
0
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13
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5.9k
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gage pathways enrichment analysis
gage pathways kegg
updated 9.5 years ago by ★ 1.6k • written 9.5 years ago by ▴ 100
8
votes
14
replies
3.8k
views
reactome.db is not updated?
genesetenrichment pathways reactome.db
updated 9.1 years ago by ▴ 150 • written 9.5 years ago by ★ 1.2k
0
votes
8
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2.0k
views
AnnBuilder and Kegg
Pathways GO Survival Cancer Organism annotate affydata vsn AnnBuilder globaltest GO vsn
updated 17.5 years ago by ▴ 190 • written 17.5 years ago by ★ 2.9k
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votes
7
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1.8k
views
Kegg pathway --> gene network
Pathways Network Pathways Network
updated 15.4 years ago by 25k • written 15.4 years ago by ▴ 40
1
vote
15
replies
3.5k
views
reactome.db: reactome IDs not mapped to pathway names
annotation pathways
updated 9.1 years ago by ▴ 150 • written 9.5 years ago by ★ 2.0k
0
votes
6
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1.4k
views
Getting GO terms and other annotation for Golub data set
Annotation Pathways GO Annotation Pathways GO
19.3 years ago michael watson IAH-C ★ 3.4k
0
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6
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2.2k
views
GOstats and KEGG
Pathways GO GOstats Pathways GO GOstats
updated 17.5 years ago by ★ 7.4k • written 17.5 years ago by ▴ 190
0
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7
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1.7k
views
Fwd: GO terms: Annotation for HumanMethylation450
Annotation Pathways GO probe annotate Annotation Pathways GO probe annotate
11.1 years ago Jinyan Huang ▴ 110
0
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5
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1.1k
views
anybody parsing BioPAX 2?
Pathways Pathways
updated 14.0 years ago by ▴ 10 • written 14.0 years ago by ★ 1.1k
0
votes
5
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2.2k
views
GSEA and Broad gene sets
Pathways GSEABase Pathways GSEABase
updated 16.5 years ago by ★ 1.2k • written 16.5 years ago by ▴ 30
0
votes
3
replies
1.2k
views
KEGG data missing from KEGG.db
Annotation Pathways Annotation Pathways
13.8 years ago Chris Fjell ▴ 60
0
votes
4
replies
1.3k
views
Up- or down- regulated pathways or GO terms?
Microarray Pathways GO Microarray Pathways GO
updated 15.1 years ago by ▴ 140 • written 15.1 years ago by ▴ 640
0
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11
replies
2.1k
views
globaltest question
Pathways probe affy Pathways probe affy
written 17.7 years ago by ▴ 30
0
votes
3
replies
1.4k
views
tool for drawing interaction network
Pathways Network Pathways Network
updated 14.0 years ago by ▴ 220 • written 14.0 years ago by ★ 4.0k
0
votes
4
replies
1.8k
views
KEGGgraph
Pathways Organism graph PROcess KEGGgraph Pathways Organism graph PROcess KEGGgraph
11.6 years ago Ricardo Silva ▴ 110
0
votes
4
replies
1.4k
views
SPIA - changes between 1.4.0 and 1.60.
Pathways SPIA Pathways SPIA
updated 13.7 years ago by ▴ 20 • written 13.7 years ago by ▴ 480
1
vote
3
replies
1.4k
views
Metabolomic data analysis with papi / papiHtest() does not work as expected
Pathways PAPi Pathways PAPi
updated 10.5 years ago by ▴ 20 • written 10.5 years ago by ★ 13k
2
votes
3
replies
4.9k
views
Pathview None of the genes or compounds mapped to the pathway
pathview pathways KEGG empty map
updated 2.8 years ago by • 0 • written 8.4 years ago by ▴ 20
0
votes
8
replies
1.7k
views
Filtering gene list prior to statistical testing
Pathways Pathways
updated 15.9 years ago by ★ 5.5k • written 15.9 years ago by ▴ 40
0
votes
2
replies
875
views
index between genes and pathways
Pathways GO Yeast Pathways GO Yeast
updated 20.5 years ago by ★ 5.5k • written 20.5 years ago by ▴ 80
0
votes
3
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1.7k
views
plot QuSAGE problem
Pathways qusage Pathways qusage
updated 10.5 years ago by ▴ 20 • written 10.5 years ago by ★ 13k
0
votes
5
replies
2.8k
views
use of voom function with attract package
Pathways GO attract Pathways GO attract
updated 10.1 years ago by 50k • written 10.1 years ago by ★ 13k
0
votes
2
replies
1.8k
views
retrieve kegg pathway abundances from gage analysis
gage pathways kegg
updated 9.2 years ago by ★ 1.6k • written 9.2 years ago by ▴ 100
0
votes
5
replies
1.7k
views
extracting interactions between members of the KEGG pathways
Pathways Infrastructure Cancer graph Pathways Infrastructure Cancer graph
updated 18.2 years ago by ★ 5.5k • written 18.2 years ago by ▴ 90
0
votes
2
replies
1.1k
views
KEGG pathway
Pathways Pathways
updated 16.7 years ago by ★ 7.2k • written 16.7 years ago by ▴ 130
0
votes
8
replies
1.3k
views
Affy data analysis
Pathways GO affy Pathways GO affy
updated 12.1 years ago by 65k • written 12.1 years ago by ▴ 180
0
votes
2
replies
990
views
Affymetrix data
Normalization Pathways GO annotate Normalization Pathways GO annotate
updated 12.1 years ago by ▴ 200 • written 12.1 years ago by ▴ 180
0
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2
replies
2.7k
views
WGCNA - Using real data for tutorial III
pathways wgcna network rna-seq
8.3 years ago hywel.williams • 0
0
votes
3
replies
1.9k
views
runSPIA() in graphite package
Pathways Breast siggenes PROcess cycle graphite Pathways Breast siggenes PROcess cycle
updated 11.3 years ago by ▴ 20 • written 11.3 years ago by ▴ 420
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votes
2
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1.6k
views
Bioconductor Digest, Vol 82, Issue 20
Annotation Pathways affy GOstats Category AnnotationDbi Annotation Pathways affy GOstats
updated 14.4 years ago by ▴ 70 • written 14.4 years ago by ▴ 60
0
votes
3
replies
1.9k
views
[Bioc-sig-seq] Bioconductor 2.8 is released
SNP Sequencing miRNA Microarray Annotation Normalization Pathways Preprocessing Survival
updated 13.1 years ago by ▴ 310 • written 13.1 years ago by ★ 8.2k
0
votes
3
replies
1.5k
views
R: Pathway Information
Genetics Pathways Cancer probe globaltest Genetics Pathways Cancer probe globaltest
updated 18.9 years ago by ▴ 360 • written 18.9 years ago by ★ 2.9k
0
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2
replies
1.4k
views
problem of cMAP package
Pathways Pathways
updated 15.0 years ago by ★ 5.5k • written 15.0 years ago by ▴ 10
0
votes
3
replies
4.9k
views
how to get gene list for given GO terms?
Pathways GO Cancer PROcess goTools genomes Pathways GO Cancer PROcess goTools genomes
updated 22 months ago by • 0 • written 12.2 years ago by ★ 7.2k
0
votes
3
replies
2.0k
views
hyperGTest, KEGG
Annotation Pathways multtest siggenes RBGL GOstats Annotation Pathways multtest siggenes
updated 17.1 years ago by ★ 7.4k • written 17.1 years ago by ▴ 80
0
votes
3
replies
772
views
permutation
Pathways Pathways
updated 13.5 years ago by ★ 13k • written 13.5 years ago by ▴ 170
0
votes
2
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1.4k
views
New gage package: Generally Applicable Gene-set/Pathway Analysis
Sequencing Microarray Pathways GO Yeast gage Sequencing Microarray Pathways GO Yeast
13.6 years ago Luo Weijun ★ 1.6k
0
votes
5
replies
1.3k
views
retrieve genes names after KEGG hypergeometric test
Annotation Pathways GO rat2302 probe affy Category Annotation Pathways GO rat2302 probe
updated 13.5 years ago by ▴ 930 • written 13.5 years ago by ▴ 230
0
votes
3
replies
1.3k
views
NCI pathways to graphNEL
Pathways graph Rredland GeneAnswers Pathways graph Rredland GeneAnswers
13.3 years ago laurent jacob ▴ 100
0
votes
2
replies
935
views
reasonable Illumina hyperG test
Pathways lumi Pathways lumi
updated 15.7 years ago by 65k • written 15.7 years ago by ▴ 370
0
votes
3
replies
2.5k
views
Visualizing KEGG pathways
Pathways graph Pathways graph
updated 15.1 years ago by ▴ 400 • written 15.1 years ago by ★ 1.1k
0
votes
4
replies
1.5k
views
Bioconductor 2.8 is released
SNP Sequencing miRNA Microarray Annotation Normalization Pathways Preprocessing Network
updated 13.1 years ago by ▴ 310 • written 13.1 years ago by ★ 8.2k
0
votes
3
replies
1.5k
views
GO enrichment and pathways
Pathways GO Pathways GO
updated 13.1 years ago by ▴ 240 • written 13.1 years ago by ▴ 240
0
votes
2
replies
997
views
stat/math question on Category vignette
Pathways Category Pathways Category
updated 16.7 years ago by ★ 7.4k • written 16.7 years ago by ▴ 890
0
votes
5
replies
2.0k
views
pathview puzzle
Pathways pathview Pathways pathview
10.7 years ago Oleg Moskvin ▴ 60
0
votes
6
replies
1.5k
views
Regarding KEGGgraph
Pathways Network PROcess Pathways Network PROcess
updated 14.4 years ago by ★ 13k • written 14.4 years ago by ▴ 270
0
votes
1
reply
1.1k
views
athPkgBuilder data source
Annotation Pathways GO probe oligo Annotation Pathways GO probe oligo
updated 17.8 years ago by ▴ 250 • written 17.8 years ago by ▴ 870
0
votes
1
reply
1.5k
views
KEGGgraph bug
Pathways Organism SIM KEGGgraph Pathways Organism SIM KEGGgraph
updated 14.4 years ago by ★ 7.2k • written 14.4 years ago by ▴ 270
0
votes
1
reply
1.2k
views
domainsignatures with non-human KEGG pathways
Pathways Organism domainsignatures Pathways Organism domainsignatures
14.4 years ago Robert Castelo ★ 3.3k
0
votes
1
reply
1.5k
views
KEGGSOAP, hgu95av2.db: limited functionality
Pathways hgu95av2 probe KEGGSOAP Pathways hgu95av2 probe KEGGSOAP
updated 14.2 years ago by ★ 7.2k • written 14.2 years ago by ▴ 70
50 results • Page 1 of 1
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Comment: Ensembl plants at annotationHub? by Daniele • 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0
Thanks a lot!
Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150
Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by Matthew Thornton ▴ 360
So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!
Votes
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
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