Bioconductor Igraph

Showing : igraph • reset

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633

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GRanges igraph

updated 15 months ago by Lluís Revilla Sancho ▴ 730 • written 16 months ago by Bogdan ▴ 670

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533

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WGCNA igraph

17 months ago María José • 0

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1.1k

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igraph networkanalysis Phylogenetics phyloseq

3.4 years ago Chantel • 0

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2.9k

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R 3.6.2 update problems with igraph and phangorn update Phyloseq igraph phangorn Tutorial

updated 4.4 years ago by Martin Morgan 25k • written 4.4 years ago by crgarcia • 0

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1.5k

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igraph network gene corexpression rna-seq

updated 2.8 years ago by Gordon Smyth 50k • written 5.1 years ago by aiswaryabioinfo • 0

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1.2k

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STRINGdb igraph

5.1 years ago Samuel Lee • 0

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1.4k

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scater scran igraph scRNA-Seq rots

updated 5.2 years ago by Aaron Lun ★ 28k • written 5.2 years ago by hamza_karakurt ▴ 50

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917

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igraph miR2Pathway Pathway page_rank

updated 6.1 years ago by Martin Morgan 25k • written 6.1 years ago by genomic8328 ▴ 10

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998

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graph pathways igraph

6.2 years ago genomic8328 ▴ 10

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3.3k

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igraph

6.6 years ago Andrew Box ▴ 10

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1.5k

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QuACN igraph

6.8 years ago lljotall ▴ 10

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2.0k

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igraph spade

updated 6.9 years ago by johnheath346 • 0 • written 8.4 years ago by duncanjamesmurray01 • 0

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1.6k

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installation package installation topaseq igraph LD_LIBRARY_PATH

7.3 years ago jan.soderman • 0

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971

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ppi network analysis igraph

8.0 years ago Abhishek Pratap ▴ 190

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1.2k

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igraph software error adjacency matrix

updated 8.0 years ago by Paul Shannon ▴ 470 • written 8.0 years ago by Angel ▴ 40

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1.2k

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RamiGO R gene ontology igraph

8.3 years ago bkellman • 0

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2.7k

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igraph

updated 8.3 years ago by Hervé Pagès 16k • written 8.3 years ago by Angel ▴ 40

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1.9k

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FEM igraph

updated 8.5 years ago by andrew • 0 • written 8.5 years ago by sirintra ▴ 10

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2.0k

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software error geNet igraph genetclassifier

updated 8.8 years ago by saibar ▴ 20 • written 8.8 years ago by alakatos ▴ 130

19 results • Page 1 of 1

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Comment: Ensembl plants at annotationHub? by Daniele • 0

Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30

Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…

Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0

Thanks a lot!

Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150

Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by Matthew Thornton ▴ 360

So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!

Votes

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?

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