Showing : Pathways • reset
8
votes
14
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3.8k
views
reactome.db is not updated?
genesetenrichment pathways reactome.db
updated 9.1 years ago by ▴ 150 • written 9.5 years ago by ★ 1.2k
2
votes
2
replies
1.1k
views
Pathway analysis and GO terms analysis with goseq
KEGG Pathways GO goseq
updated 3.4 years ago by 65k • written 3.4 years ago by • 0
2
votes
0
replies
951
views
Saving the results of the topGO package as an R object (rda/rds file).
RNASeq GO topGO Pathways
3.3 years ago Ben ▴ 50
2
votes
1
reply
2.1k
views
pre-filtering gene sets for GSVA/ssGSEA
gsea ssgsea gsva pathways
updated 3.8 years ago by ★ 3.3k • written 3.8 years ago by ▴ 50
2
votes
4
replies
2.2k
views
ReactomePA / Reactome: Extraction of genes within a term
pathways reactomepa functional annotation
updated 6.0 years ago by ★ 1.2k • written 6.0 years ago by • 0
2
votes
2
replies
985
views
Help for Research Proposal
drug development pathways bioinformatics
updated 5.4 years ago by ★ 13k • written 5.5 years ago by • 0
2
votes
2
replies
211
views
How many of my genes from my gene list are in each KEGG pathway?
Pathways clusterProfiler gseKEGG KEGG
4 weeks ago julia_mcdonough • 0
2
votes
1
reply
1.2k
views
Problem with data not found using pathview package
pathways
updated 9.0 years ago by 65k • written 9.0 years ago by • 0
2
votes
1
reply
1.9k
views
Pathview graph with multiple states/samples or time series
Pathways graph Pathways graph
updated 6.3 years ago by • 0 • written 10.6 years ago by ★ 1.6k
2
votes
0
replies
1.4k
views
Job: PhD student positions in the areas of Bioinformatics, Computer Science and Biostatistics
bioinformatician job job phd R pathways Job
7.7 years ago Frank Kramer ▴ 60
2
votes
3
replies
4.9k
views
Pathview None of the genes or compounds mapped to the pathway
pathview pathways KEGG empty map
updated 2.8 years ago by • 0 • written 8.4 years ago by ▴ 20
1
vote
2
replies
835
views
Pathway analysis of RNAseq data using goseq package
Pathways goseq RNASeqData
2.2 years ago • updated 2.1 years ago m.glymenaki • 0
1
vote
0
replies
1.4k
views
Job: Bioinformatician/Computational Biologist - Dublin City, Ireland
bioinformatician job computational biology genomes pathways machine learning Job
6.6 years ago bulfin.triona ▴ 10
1
vote
15
replies
3.5k
views
reactome.db: reactome IDs not mapped to pathway names
annotation pathways
updated 9.1 years ago by ▴ 150 • written 9.5 years ago by ★ 2.0k
1
vote
1
reply
2.3k
views
miRNA- KEGG
Pathways Pathways
updated 12.2 years ago by ▴ 610 • written 12.2 years ago by ▴ 290
1
vote
3
replies
1.4k
views
Metabolomic data analysis with papi / papiHtest() does not work as expected
Pathways PAPi Pathways PAPi
updated 10.5 years ago by ▴ 20 • written 10.5 years ago by ★ 13k
1
vote
1
reply
1.1k
views
News: SBGNview: Data Analysis, Integration and Visualization on 5000+ Pathways/3000+ Species
SBGNview pathways SBGNview.data pathview visualization
3.2 years ago Luo Weijun ★ 1.6k
0
votes
5
replies
2.2k
views
GSEA and Broad gene sets
Pathways GSEABase Pathways GSEABase
updated 16.5 years ago by ★ 1.2k • written 16.5 years ago by ▴ 30
0
votes
0
replies
945
views
postdoc available
Pathways Network Classification Cancer Pathways Network Classification Cancer
20.4 years ago Jean-Philippe Vert ▴ 10
0
votes
0
replies
2.5k
views
Postdoctoral Fellow - Bioinformatics - Singapore, IMCB, Biopolis
Genetics Metabolomics Pathways Cancer Genetics Metabolomics Pathways Cancer
12.7 years ago Emilie Bard ▴ 10
0
votes
2
replies
875
views
index between genes and pathways
Pathways GO Yeast Pathways GO Yeast
updated 20.5 years ago by ★ 5.5k • written 20.5 years ago by ▴ 80
0
votes
5
replies
1.7k
views
extracting interactions between members of the KEGG pathways
Pathways Infrastructure Cancer graph Pathways Infrastructure Cancer graph
updated 18.2 years ago by ★ 5.5k • written 18.2 years ago by ▴ 90
0
votes
0
replies
1.1k
views
Courses in Practical DNA Microarray Analysis 2006
Microarray Genetics Pathways Preprocessing Classification Cancer Microarray Genetics
18.4 years ago Wolfgang Huber ★ 13k
0
votes
1
reply
912
views
Limma issues.
Pathways limma Pathways limma
updated 20.5 years ago by 50k • written 20.5 years ago by ▴ 150
0
votes
0
replies
976
views
BIRD
Pathways microRNA Pathways microRNA
18.0 years ago Prof.Roland Wagner ▴ 60
0
votes
1
reply
804
views
Gene set analysis/Global test with 3 replicates
Pathways Pathways
updated 17.9 years ago by ▴ 550 • written 17.9 years ago by ▴ 500
0
votes
0
replies
1.3k
views
BIRD: Fiest internation conference : Bioinformatics in Research and Development
Pathways microRNA Pathways microRNA
17.8 years ago Prof.Roland Wagner ▴ 60
0
votes
1
reply
1.1k
views
athPkgBuilder data source
Annotation Pathways GO probe oligo Annotation Pathways GO probe oligo
updated 17.8 years ago by ▴ 250 • written 17.8 years ago by ▴ 870
0
votes
0
replies
1.3k
views
BIRD Call for papers and posrters: New submission deadline September 15
Pathways microRNA Pathways microRNA
17.7 years ago Prof.Roland Wagner ▴ 60
0
votes
0
replies
733
views
a simple question
Pathways Pathways
17.7 years ago Weiwei Shi ★ 1.2k
0
votes
0
replies
1.2k
views
error in plotKEGGGraph
Pathways GLAD KEGGgraph Pathways GLAD KEGGgraph
13.6 years ago Robert M. Flight ▴ 280
0
votes
0
replies
983
views
in case you have a visualization paper to submit
Microarray Alignment Pathways Visualization Microarray Alignment Pathways Visualization
17.2 years ago Vincent J. Carey, Jr. 6.7k
0
votes
0
replies
821
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heatmap and hcluster from limma out put object
Pathways limma Pathways limma
18.8 years ago Gordon Smyth 50k
0
votes
0
replies
840
views
heatmap and hcluster from limma out put object
Pathways limma Pathways limma
18.8 years ago Marcelo Luiz de Laia ▴ 770
0
votes
8
replies
2.0k
views
AnnBuilder and Kegg
Pathways GO Survival Cancer Organism annotate affydata vsn AnnBuilder globaltest GO vsn
updated 17.5 years ago by ▴ 190 • written 17.5 years ago by ★ 2.9k
0
votes
0
replies
673
views
nf kappa pathway
Pathways Pathways
18.9 years ago Auer Michael ▴ 250
0
votes
0
replies
864
views
PFAM annotation from HyperG
Pathways annotate Category Pathways annotate Category
16.9 years ago Dario Greco ▴ 310
0
votes
0
replies
698
views
how to find the children identifiers of a specific KEGGidentifier in R??
Microarray Annotation Pathways GO Microarray Annotation Pathways GO
17.0 years ago Francois Pepin ★ 1.3k
0
votes
3
replies
1.5k
views
R: Pathway Information
Genetics Pathways Cancer probe globaltest Genetics Pathways Cancer probe globaltest
updated 18.9 years ago by ▴ 360 • written 18.9 years ago by ★ 2.9k
0
votes
0
replies
1.6k
views
pathview vectorized output?
Pathways graph pathview Pathways graph pathview
10.3 years ago Luo Weijun ★ 1.6k
0
votes
0
replies
831
views
The above Feelgood Formula enshrines the common philosophy that the better you treat people, the better they will work.
Pathways PROcess BRAIN Pathways PROcess BRAIN
16.9 years ago Neddy ▴ 10
0
votes
1
reply
1.0k
views
html report of hyperGTest question
Pathways GO Pathways GO
updated 16.8 years ago by ★ 7.4k • written 16.8 years ago by ▴ 100
0
votes
2
replies
1.4k
views
KEGG package
Pathways Pathways
updated 16.8 years ago by ★ 2.9k • written 16.8 years ago by ▴ 130
0
votes
2
replies
997
views
stat/math question on Category vignette
Pathways Category Pathways Category
updated 16.7 years ago by ★ 7.4k • written 16.7 years ago by ▴ 890
0
votes
1
reply
1.0k
views
KEGGSOAP: color.pathway.by.objects
Pathways KEGGSOAP Pathways KEGGSOAP
updated 16.7 years ago by ★ 2.9k • written 16.7 years ago by ▴ 30
0
votes
2
replies
1.1k
views
KEGG pathway
Pathways Pathways
updated 16.7 years ago by ★ 7.2k • written 16.7 years ago by ▴ 130
0
votes
0
replies
1.7k
views
BIRD 2008 Conference
Genetics Pathways Cancer microRNA Genetics Pathways Cancer microRNA
16.4 years ago Prof. Roland Wagner ▴ 100
0
votes
5
replies
2.7k
views
Help using ENSMUSG ids in GOstats
Microarray Pathways GOstats Microarray Pathways GOstats
updated 16.0 years ago by ★ 5.5k • written 16.0 years ago by ▴ 30
0
votes
8
replies
1.7k
views
Filtering gene list prior to statistical testing
Pathways Pathways
updated 15.9 years ago by ★ 5.5k • written 15.9 years ago by ▴ 40
0
votes
0
replies
954
views
Mean Plots and Heat Maps for Chromosome Bands
Pathways hgu95av2 Pathways hgu95av2
15.5 years ago McGee, Monnie ▴ 300
50 results • Page 1 of 1
Recent ...
Replies
Comment: Ensembl plants at annotationHub? by Daniele • 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0
Thanks a lot!
Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150
Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by Matthew Thornton ▴ 360
So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!
Votes
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
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