Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
egsea
•
reset
3
votes
5
replies
282
views
Help with running egsea()
EGSEA
10 days ago • updated 9 days ago
Chris
▴ 10
0
votes
1
reply
289
views
EGSEA with Affymetrix data
EGSEA
updated 6 months ago by
James W. MacDonald
65k • written 6 months ago by
cverschoor
• 0
0
votes
1
reply
409
views
Is it possible to use pre-ranked list in EGSEA?
EGSEA
EGSEAdata
EGSEA123
DifferentialExpression
updated 8 months ago by
James W. MacDonald
65k • written 8 months ago by
Tiago
• 0
0
votes
1
reply
767
views
EGSEA::egsea - Parallelization issue and "Error in array(col.rgb[, i], dim(node.rgb)[3:1]) : negative length vectors are not allowed"
egsea
EGSEA123
13 months ago
neilzhao
▴ 30
0
votes
3
replies
1.9k
views
Problem in kegga() and others getting data from KEGG after switch from http to https
limma
KEGGREST
EGSEA
updated 23 months ago by
shepherl
3.9k • written 23 months ago by
Jenny Drnevich
★ 2.0k
6
votes
6
replies
2.8k
views
EGSEA error during report generation: "only 0's may be mixed with negative subscripts"
EGSEA
updated 3.5 years ago by
Martin
• 0 • written 4.9 years ago by
pgugger
▴ 70
1
vote
0
replies
729
views
EGSEA - clarification of values in the Stats Table
egsea
limma
4.7 years ago
rocanja
▴ 60
0
votes
2
replies
1.3k
views
How an index is built for each gene set collections using buildCustomIdx() indexing function of EGSEA package?
EGSEA
edgeR
biomaRt
limma
RNA-seq
4.7 years ago
fgol
▴ 10
9
votes
7
replies
20k
views
Single Sample GSEA (ssGSEA) and dynamic range of expression
ssgsea
gsva
piano
egsea
updated 5 months ago by
amin8w
▴ 10 • written 6.8 years ago by
sina.nassiri
▴ 130
0
votes
1
reply
2.2k
views
DGEList remove/exclude rows with entrezgene = 'NA'
edger
dgelist
NA
egsea
updated 6.2 years ago by
Gordon Smyth
50k • written 6.2 years ago by
belmore
• 0
1
vote
0
replies
1.0k
views
EGSEA install licensed KEGG data
EGSEA
KEGG
EGSEAdata
6.3 years ago
john.thompson
▴ 10
0
votes
0
replies
857
views
Contrast matrix for a continuous covariate - for EGSEA algorithm
design and contrast matrix
egsea
6.3 years ago
Stefano Mangiola
▴ 10
0
votes
5
replies
2.7k
views
EGSEA generateReport() error "no adj nodes"
EGSEA
EGSEA123
updated 6.5 years ago by
Monther Alhamdoosh
▴ 40 • written 6.5 years ago by
Jenny Drnevich
★ 2.0k
1
vote
1
reply
1.1k
views
EGSEA : unable to plot heatmaps.
EGSEA
R bioconductor
6.7 years ago
RV
• 0
0
votes
2
replies
1.5k
views
Ensemble EGSEA (EGSEA): base GSA method failures
egsea
7.1 years ago
irizarnaunk
• 0
2
votes
7
replies
1.8k
views
EGSEA - failing to write report
EGSEA
write
updated 7.3 years ago by
Monther Alhamdoosh
▴ 40 • written 7.3 years ago by
mforde84
▴ 20
2
votes
4
replies
1.7k
views
EGSEA usage with microarray data (with vooma)?
EGSEA
gene set testing
vooma
limma voom
gsea
updated 8 days ago by
Chris
▴ 10 • written 7.4 years ago by
Pekka Kohonen
▴ 190
0
votes
4
replies
1.9k
views
EGSEA: how does the program generate the value for the up or down regulation of gene sets or pathways
pathways
gsea
egsea
gage
updated 7.6 years ago by
Monther Alhamdoosh
▴ 40 • written 7.6 years ago by
yingchen
• 0
18 results • Page
1 of 1
Recent ...
Replies
Comment: Ensembl plants at annotationHub?
by
Johannes Rainer
★ 2.0k
Dear Daniele, for which Ensembl release would you need the data? the most recent is 112, but if you used a different version before it wou…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
by
BioinfGuru
▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
by
makala
• 0
Thanks a lot!
Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
by
Erik Wright
▴ 150
Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…
Votes
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
Awards
• All
Popular Question
to
Johannes Rainer
★ 2.0k
Popular Question
to
Chris
▴ 10
Popular Question
to
Guido Hooiveld
★ 4.0k
Scholar
to
Michael Love
42k
Popular Question
to
Vincent J. Carey, Jr.
6.7k
Locations
• All
The city by the bay,
8 minutes ago
Italy,
11 minutes ago
Greece,
12 minutes ago
Singapore,
29 minutes ago
China,
1 hour ago
Traffic: 435 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6