Showing : visualization • reset
0
votes
2
replies
347
views
Missing Band on Volcano Plot from DESeq2
DESeq2 Visualization DifferentialExpression
updated 9 weeks ago by 42k • written 9 weeks ago by • 0
0
votes
0
replies
235
views
Catalyst::cluster function does NOT produce the same results when setting seed
visua Visualization CATALYST
5 months ago elefth.pavlos ▴ 40
5
votes
11
replies
3.2k
views
Visualization of negative log CPM values
Visualization Normalization ggplot2 edgeR
written 11 months ago by ▴ 20
0
votes
2
replies
881
views
ggplot2 bar plot
R Visualization ggplot2
19 months ago Jitendra ▴ 10
4
votes
6
replies
1.4k
views
How to best visualize multi-level transcriptomics experiment data?
ggplot2 Transcriptomics Visualization R limma
24 months ago mohammedtoufiq91 ▴ 10
0
votes
1
reply
941
views
Unable to label in Enhanced Volcano
Visualization
updated 2.4 years ago by ★ 3.9k • written 2.4 years ago by • 0
0
votes
4
replies
1.4k
views
rtracklayer can't access hg38 on UCSC?
rtracklayer Visualization
updated 2.5 years ago by 16k • written 2.5 years ago by • 0
1
vote
1
reply
1.1k
views
News: SBGNview: Data Analysis, Integration and Visualization on 5000+ Pathways/3000+ Species
SBGNview pathways SBGNview.data pathview visualization
3.2 years ago Luo Weijun ★ 1.6k
1
vote
3
replies
1.7k
views
copy number variation analysis (CNV)
copynumber plot visualization NGS gene
updated 3.4 years ago by ▴ 210 • written 3.6 years ago by • 0
2
votes
2
replies
1.2k
views
Can't display protein domain data from UCSC table unipDomain using Gviz
Gviz protein visualization UcscTrack protein domains
updated 3.7 years ago by 65k • written 3.7 years ago by ▴ 10
5
votes
11
replies
1.5k
views
Visualization tool for GC-bias in SE data?
GC-bias ALPINE visualization
updated 3.9 years ago by 42k • written 3.9 years ago by ▴ 20
0
votes
0
replies
737
views
Sample grouping (phenoData) and visualization in R package- HtqPCR
HtqPCR grouping visualization R phenoData
4.7 years ago mohammedtoufiq91 ▴ 10
0
votes
9
replies
1.9k
views
visualizing alignment without realignment
msa alignment visualization
updated 5.2 years ago by 25k • written 5.2 years ago by • 0
0
votes
8
replies
12k
views
How to generate a volcano plot when p-values from DESeq2 are zero?
deseq2 pvalue visualization enhancedvolcano rnaseq
updated 5.3 years ago by 42k • written 5.3 years ago by • 0
2
votes
2
replies
1.1k
views
What can be done to separate the healthy and patient samples in PCA plot and Distance matrix
deseq2 PCAplot Visualization
updated 5.3 years ago by 42k • written 5.3 years ago by • 0
1
vote
2
replies
1.2k
views
Package for custom visualization of multiple sequence alignment
MSA visualization
updated 5.6 years ago by ▴ 20 • written 5.6 years ago by • 0
3
votes
3
replies
1.1k
views
how to plot trends for differentialy expressed genes from normalized count matrix (EdgeR)
edger clustering visualization
updated 5.6 years ago by 65k • written 5.6 years ago by ▴ 10
0
votes
0
replies
1.0k
views
Netbiov vertex.color vector length error
netowrk visualization
5.8 years ago Wojeff • 0
0
votes
4
replies
1.4k
views
Deseq2 problem visualizing gene expression with batch corrected values
deseq2 limma differential expression visualization
updated 5.9 years ago by 42k • written 5.9 years ago by • 0
8
votes
12
replies
8.9k
views
EdgeR: Explaning dispersion types to newbies
edger dispersion estimatedispersions visualization teaching
updated 5.9 years ago by ★ 28k • written 5.9 years ago by ▴ 20
0
votes
0
replies
1.3k
views
pathview and gage server connection issue
pathview gage pathway analysis kegg visualization
6.3 years ago Luo Weijun ★ 1.6k
0
votes
0
replies
1.0k
views
spotSegmentation package: How to "display the entire block of segmented spots at the end of processing"
spotsegmentation argument visualization
6.7 years ago rene_houtman • 0
2
votes
4
replies
1.6k
views
chimeraviz - import own fusion file for visualization
visualization chimeraviz
updated 2.8 years ago by • 0 • written 6.9 years ago by ▴ 10
0
votes
0
replies
1.5k
views
News: Pathview Web server published in NAR
pathway analysis visualization data integration omics pathview News
7.0 years ago Luo Weijun ★ 1.6k
0
votes
1
reply
1.2k
views
Change DEXSeq plot: Intron length/width and genes from - strand
rnaseq r dexseq visualization
7.0 years ago aleipz • 0
0
votes
3
replies
2.3k
views
RNAseq read coverage plot: What tool?
rnaseq visualization plotcoveragehist
updated 7.1 years ago by ★ 1.3k • written 7.1 years ago by ▴ 130
2
votes
2
replies
4.3k
views
How can I visualize Gene Set Enrichment Results from gseGo fun. (clusterProfiler)?
ggplot2 clusterprofiler visualization gseGo
7.1 years ago • updated 3.5 years ago tcalvo ▴ 90
0
votes
2
replies
1.4k
views
DMRcate DMR.plot Turn Off Group Means
dmrcate visualization
updated 7.3 years ago by ▴ 180 • written 7.3 years ago by • 0
0
votes
7
replies
2.3k
views
Bioconductor 2.6 is released
Sequencing Microarray Visualization Infrastructure PROcess beadarray keggorthology eisa
updated 7.7 years ago by • 0 • written 14.1 years ago by ★ 1.6k
1
vote
0
replies
1.5k
views
News: BioCAsia, 4th November 2016, Brisbane, Australia
conference transcription epigenomics visualization infrastructure News
7.9 years ago Matthew Ritchie ▴ 1000
0
votes
1
reply
1.3k
views
Survey on interactive visualization and Bioconductor
visualization epivizr
7.9 years ago Hector Corrada Bravo ▴ 60
0
votes
1
reply
1.5k
views
ChIPseeker gene body plot
chipseeker visualization
updated 7.9 years ago by ★ 1.2k • written 7.9 years ago by ▴ 50
7
votes
0
replies
3.7k
views
Tutorial: New edX "Data analysis for Life Sciences" module: High performance computing for reproducible genomics
annotation genomicranges visualization docker shiny Tutorial
8.2 years ago Vincent J. Carey, Jr. 6.7k
0
votes
0
replies
1.6k
views
Pathview Web Server: user friendly pathway visualization and data integration
pathview pathway analysis visualization web server omics data
8.4 years ago Weijun Luo • 0
3
votes
5
replies
2.3k
views
Explanation of warning output of pathview regarding visualization of a KEGG pathway with Graphviz format
pathview clusterProfiler KEGGpath visualization Graphviz
updated 8.5 years ago by ★ 1.6k • written 8.5 years ago by ▴ 830
0
votes
5
replies
2.7k
views
Gene Symbol with Pathview
pathview bioconductor kegg visualization
updated 8.6 years ago by ★ 1.6k • written 8.6 years ago by • 0
3
votes
0
replies
1.7k
views
News: BioCAsia, 8 Sept 2015, Tokyo
sequencing transcription epigenomics visualization infrastructure News
8.9 years ago • updated 8.8 years ago Matthew Ritchie ▴ 1000
0
votes
0
replies
1.5k
views
flowWorkspace and ggcyto
flowworkspace flow cytometry visualization
8.8 years ago Jiang, Mike ★ 1.3k
11
votes
0
replies
5.8k
views
Tutorial: Introduction to Bioconductor for high-throughput sequence analysis
GenomicRanges Annotation RNAseq visualization Tutorial
8.9 years ago Martin Morgan 25k
8
votes
0
replies
3.6k
views
Tutorial: Statistics and Computing in Genome Science (CSAMA) Course Material
rnaseq chipseq visualization metagenomics proteomics Tutorial
8.9 years ago Martin Morgan 25k
1
vote
3
replies
2.0k
views
Visualizing gene counts and variance stabilization
deseq2 rnaseq variancestabilizingtransformation visualization
updated 8.9 years ago by 42k • written 8.9 years ago by ▴ 40
0
votes
2
replies
3.5k
views
Mapping gene IDs to gene symbol of KEGG pathways with "Pathview"
Pathview KEGG annotation gene symbol visualization
updated 8.9 years ago by ★ 1.6k • written 8.9 years ago by ▴ 130
0
votes
1
reply
1.5k
views
Graphic representation of mroast results
mroast visualization
9.0 years ago Elena Serrano ▴ 30
1
vote
2
replies
2.7k
views
gene expression visualization: lineplot with ggplot2
ggplot2 lineplot visualization
updated 9.0 years ago by ▴ 180 • written 9.0 years ago by ▴ 130
0
votes
0
replies
1.4k
views
Circos Styling plots is now easy with canceR package
canceR visualization omiccircos
9.0 years ago kmezhoud ▴ 10
1
vote
1
reply
1.5k
views
Visualizing Structural variants
visualization SV
updated 9.0 years ago by 6.7k • written 9.0 years ago by ▴ 190
0
votes
0
replies
1.8k
views
Job: Post-Doctoral Research Fellow - Patient Genomics Data Visualization
visualization genomics personalized medicine systemsbiology js Job
9.1 years ago Hamid Bolouri ▴ 50
0
votes
7
replies
4.9k
views
Visualization of rownames in the heatmap.2 function for selected DE genes of a microarray dataset
heatmap.2 gplots differential gene expression visualization
9.1 years ago svlachavas ▴ 830
1
vote
0
replies
1.9k
views
Job: PhD position - Heidelberg: Bioinformatic analysis of high-throughput and image-based RNAi screening data
high-throughput screening RNAi image analysis data integration visualization Job
9.2 years ago e.schmidt ▴ 10
0
votes
0
replies
1.3k
views
News: OmicCircos was updated
visualization omiccircos News
9.2 years ago Hu, Ying NIH/NCI [E] ▴ 50
50 results • Page 1 of 1
Recent ...
Replies
Comment: Ensembl plants at annotationHub? by Daniele • 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0
Thanks a lot!
Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150
Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by Matthew Thornton ▴ 360
So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!
Votes
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
Awards • All
Popular Question to Chris ▴ 10
Popular Question to Guido Hooiveld ★ 4.0k
Scholar to Michael Love 42k
Popular Question to Vincent J. Carey, Jr. 6.7k
Popular Question to boczniak767 ▴ 720
Locations • All
Hong Kong, 32 minutes ago
WEHI, Melbourne, Australia, 45 minutes ago
Hong Kong, 1 hour ago
United States, 1 hour ago
Melbourne, Australia, 1 hour ago
Traffic: 391 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6