Bioconductor Protein

Showing : Protein • reset

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604

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protein database glutathionylation PTM

3.6 years ago Camelia • 0

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1.3k

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microarray normalization protein

updated 4.2 years ago by Wolfgang Huber ★ 13k • written 5.6 years ago by keniajin • 0

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1.5k

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Gviz protein visualization UcscTrack protein domains

updated 4.4 years ago by James W. MacDonald 67k • written 4.4 years ago by paul.jaschke ▴ 10

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1.2k

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microarray protein analysis ProteomeProfiler

updated 4.9 years ago by Gordon Smyth 52k • written 4.9 years ago by hcnbox • 0

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3.1k

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STRINGdb R protein

updated 5.7 years ago by zhanghongjie000 • 0 • written 5.8 years ago by shahroze786 • 0

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1.0k

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Protein iranges sequencing

5.9 years ago ieuangw • 0

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1.2k

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protein disease pathway analysis pathways

6.5 years ago ረ • 0

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1.2k

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dnaseq pathway analysis protein biomarkers

7.0 years ago emadelhewihy • 0

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1.1k

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R blast blastsequences protein

7.0 years ago andres.susrud • 0

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1.6k

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biostrings iranges sequence alignment protein

updated 8.0 years ago by Michael Lawrence ★ 11k • written 8.0 years ago by Assa Yeroslaviz ★ 1.5k

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2.6k

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biostrings fasta protein

updated 8.0 years ago by James W. MacDonald 67k • written 8.0 years ago by fastabest • 0

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2.6k

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xcms convert protein

updated 8.2 years ago by Johannes Rainer ★ 2.1k • written 8.2 years ago by ray.bacala • 0

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1.3k

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bioinformatics protein variantannotation data integration Job

8.2 years ago stephan.pabinger • 0

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1.6k

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iranges biostrings fasta protein readaastringset

updated 8.3 years ago by Michael Lawrence ★ 11k • written 8.3 years ago by Assa Yeroslaviz ★ 1.5k

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1.9k

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protein vcf

9.8 years ago dan.gatti • 0

15 results • Page 1 of 1

Recent ...

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Answer: I am having issues with bowtie2_build by James W. MacDonald 67k

Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…

Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k

Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…

Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Prakash Sah • 0

Thanks James!

Votes

Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?

C: How does edgeR cpm function calculate log(CPM) values?

Answer: Selection of correct coefficients or contrasts in DESeq2

A: PDCD1 missing from TxDb.Hsapiens.UCSC.hg38.knownGene?

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Popular Question to bastien_chassagnol • 0