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sequence
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0
votes
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reply
821
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Scoring DNA motifs by conservation
conservation
sequence
genomicalignments
5.8 years ago
martin.busch
• 0
4
votes
3
replies
1.7k
views
Extracting sequences from BSgenomeViews object
sequence
bsgenome
updated 6.8 years ago by
Martin Morgan
25k • written 6.8 years ago by
nicola.romano
▴ 10
0
votes
2
replies
2.1k
views
Biostrings: retrieve 3'UTR sequence with Transcript
R
Biostrings
sequence
updated 7.2 years ago by
Mike Smith
★ 6.5k • written 7.2 years ago by
aspenaure
• 0
2
votes
4
replies
1.4k
views
plotting proteases digestion points in a protein
biostrings
iranges
sequence
alignment
protein
updated 7.3 years ago by
Michael Lawrence
★ 11k • written 7.3 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
1
reply
1.9k
views
Map siRNA-Sequence to Gene
sequence
annotationhub
biostrings
updated 8.8 years ago by
Hervé Pagès
16k • written 8.8 years ago by
antje.janosch
• 0
0
votes
1
reply
1.4k
views
ABI HRM data analysis
ABI
sequence
DNA
melting
curve
updated 9.0 years ago by
Hervé Pagès
16k • written 9.0 years ago by
Prasanth
▴ 20
3
votes
3
replies
1.7k
views
Reading large DNA alignments and keeping polymorphic sites
sequence
alignment
biostrings
updated 9.5 years ago by
Hervé Pagès
16k • written 9.5 years ago by
ben.ward
▴ 30
0
votes
2
replies
1.7k
views
How do I extract data from a .ab1 file ?
ab1
sequence
sangerseqR
updated 9.5 years ago by
aaron.l.statham
▴ 10 • written 9.5 years ago by
anuragm
• 0
8 results • Page
1 of 1
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Replies
Comment: How to compare subset of samples from VCF files
by
Gordon Smyth
50k
Welcome to Bioconductor support. Did you know that you can delete your old postings if they haven't received an answer yet? Instead of ap…
Comment: How to compare subset of samples from VCF files
by
Marco
• 0
Here's the vcf file as code block ``` ##fileformat=VCFv4.2 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth"> ##FOR…
Comment: Gviz and custom database
by
James W. MacDonald
66k
The vignette for `Gviz` says you can use a `DNAStringSet`, generated using `Biostrings`. Have you tried that?
Comment: Gviz and custom database
by
luigi.faino
• 0
Dear, this is not what I need. I need to transform a fasta sequence in a genome track usable in Gviz. L
Answer: Gviz and custom database
by
James W. MacDonald
66k
https://bioconductor.org/packages/release/bioc/vignettes/txdbmaker/inst/doc/txdbmaker.html
Votes
Answer: makeExampleDESeqDataSet using pilot data
Answer: Checking/updating package versions
Answer: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)?
convert data frame of Entrez IDs to Gene Symbols
Answer: LRT, pairwise comparisons and p-value adjustment
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