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Join the Bioconductor Community Advisory Board
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CAB
3.1 years ago • updated 3.0 years ago
shepherl
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News:
BioC2022 Seattle July 27-29 hybrid conference organizing committee
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Conference
3.2 years ago
Levi Waldron
★ 1.1k
1
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News:
Ensembl 105 has just been released!
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3.2 years ago
mchakiachvili
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News:
Final List of Deprecated Packages for Bioc3.14
ExperimentData
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Software
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3.4 years ago • updated 2.9 years ago
shepherl
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Bioconductor 3.14 is Released!
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shepherl
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Ascona Workshop “Biological systems: from first principles to data-driven modelling and back” 27. 3. - 1. 4. 2022
theory
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ascona
Workshop
3.4 years ago • updated 2.1 years ago
Wolfgang Huber
★ 13k
3
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Service problems noted
bioconductor
updated 3.4 years ago by
shepherl
4.1k • written 3.4 years ago by
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6.7k
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BioC Asia Virtual Meeting, 1-4 November 2021
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Asia
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3.4 years ago
Peter Hickey
▴ 750
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1.0k
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New Package Submission Deadline for Bioc Release 3.14
newpackage
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3.5 years ago
shepherl
4.1k
1
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3.5 years ago
shepherl
4.1k
2
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0
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1.4k
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News:
BioCAsia Virtual Meeting, 15-18 October 2020
news
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written 4.5 years ago by
Matthew Ritchie
▴ 1000
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knitr ERROR on Biocondcutor builders
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3.6 years ago
shepherl
4.1k
3
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870
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Bioconductor
3.6 years ago
shepherl
4.1k
0
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1.0k
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Bioconductor 2021 Scholarship and Caregiver Awards
Bioc2021
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3.7 years ago
shepherl
4.1k
0
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Bioconductor
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3.8 years ago
shepherl
4.1k
5
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1.2k
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3.8 years ago
shepherl
4.1k
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922
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Long-term Bioconductor Contribution Award
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3.8 years ago
shepherl
4.1k
2
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5
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News:
New in DiffBind 3.2: dba.plotProfile() - Peak profiles and profile heatmaps
profileplyr
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DiffBind
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updated 2.2 years ago by
Junsik
• 0 • written 3.8 years ago by
Rory Stark
★ 5.2k
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917
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Last day to make commit before the RELEASE_3_13
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Bioc3.13
3.8 years ago
shepherl
4.1k
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983
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Scientific or Informatic Technology Advancement Award!
Bioconductor
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3.8 years ago
shepherl
4.1k
1
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938
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Bioconductor
3.8 years ago
shepherl
4.1k
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annotation
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3.8 years ago
kayla.interdonato
▴ 160
2
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2
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1.8k
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News:
Final List of Deprecated Packages for Bioc3.13
Workflow
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4.2 years ago • updated 3.8 years ago
shepherl
4.1k
0
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0
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995
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community
Bioconductor
3.8 years ago
Charlotte Soneson
▴ 170
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Ensembl 104 has just been released!
ensembldb
biomaRt
3.8 years ago
mchakiachvili
▴ 20
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Bioconductor
3.8 years ago
shepherl
4.1k
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3.9 years ago
shepherl
4.1k
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1.1k
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Bioconductor
3.9 years ago
shepherl
4.1k
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Terra
3.9 years ago
shepherl
4.1k
0
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1.0k
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News:
Bioconductor Release 3.12 and Bioconductor Devel 3.13 Code Freeze Deadlines!
Bioconductor
release
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deadline
3.9 years ago • updated 3.8 years ago
shepherl
4.1k
0
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0
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963
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Bioconductor
Bioc2021
3.9 years ago
shepherl
4.1k
0
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1.2k
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3.9 years ago
shepherl
4.1k
0
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Bioc2021
3.9 years ago
shepherl
4.1k
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755
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3.9 years ago
natay.aberra
10
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3.9 years ago
shepherl
4.1k
2
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bioconductoroversight
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BiocVersion
3.9 years ago
Matthew Ritchie
▴ 1000
0
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1.1k
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News:
SBGNview manuscript on bioRxiv now
pathway
SBGNview
Reactome
pathview
PANTHER
written 3.9 years ago by
Luo Weijun
★ 1.6k
0
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1.2k
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News:
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Conference
Bioc2021
updated 4.0 years ago by
Levi Waldron
★ 1.1k • written 4.0 years ago by
shepherl
4.1k
1
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News:
SBGNview: Data Analysis, Integration and Visualization on 5000+ Pathways/3000+ Species
SBGNview
pathways
SBGNview.data
pathview
visualization
4.0 years ago
Luo Weijun
★ 1.6k
4
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2.5k
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News:
Join the Bioconductor Community Advisory Board
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BiocVersion
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aedin
• 0 • written 4.1 years ago by
Matthew Ritchie
▴ 1000
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947
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Conference
4.0 years ago
Levi Waldron
★ 1.1k
0
votes
2
replies
1.7k
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News:
Ensembl 103 has been released
biomaRt
ensembldb
Ensembl
ensemblVEP
Biomart
4.0 years ago • updated 3.8 years ago
mchakiachvili
▴ 20
3
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3
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News:
Bioconductor code of conduct
biocon
code-of-conduct
Bioconductor
updated 4.1 years ago by
Lluís Revilla Sancho
▴ 760 • written 4.1 years ago by
Laurent Gatto
1.6k
0
votes
0
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News:
Early career researchers: nominate to present your work at BVCN virtual conference on microbiome research
microbiome
news
Conference
4.1 years ago
Matthew Ritchie
▴ 1000
0
votes
1
reply
1.3k
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News:
Community engagement and outreach award
bioconductor
bioc2020
award
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News
written 4.7 years ago by
shepherl
4.1k
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News:
Online training - Proteomics in R and Bioconductor
ProteomicsWorkflow
proteomics
Proteome
4.2 years ago
info
▴ 10
0
votes
0
replies
964
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News:
Ensembl 102 has been released
Ensembl
biomaRt
BioMar
ensembldb
4.3 years ago
mchakiachvili
▴ 20
2
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920
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News:
BioC2021 organizing committee
BioC2021
S4Vectors
4.3 years ago
Levi Waldron
★ 1.1k
3
votes
3
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1.4k
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News:
Extended submission deadline for EuroBioc2020
talk
workshop
conference
eurobioc
poster
written 4.3 years ago by
kevin.rue
▴ 350
1
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1.9k
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News:
Extensive updates in DiffBind 3.0
Normalization
ATACSeq
ChIPSeq
DiffBind
chipseq
written 4.3 years ago by
Rory Stark
★ 5.2k
533 results • Page
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Comment: how many significant figures are there in DESeq2 output
by
ATpoint
★ 4.7k
If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…
Comment: Compare TCGA-PAAD with GTEx gene expression
by
Jane
• 0
why aren't there any answers?
Comment: Too many significant genes when integrating gtex and tcga
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Jane
• 0
I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…
Comment: how many significant figures are there in DESeq2 output
by
Matthew McCormack
▴ 180
Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…
Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to
by
ATpoint
★ 4.7k
No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…
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A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
Answer: Vertical line at A=0, nothing else, on MA plot
Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
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