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2.2 years ago • updated 2.1 years ago
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Maria Doyle
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Maria Doyle
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Laurent Gatto
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Laurent Gatto
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shepherl
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2.6 years ago
shepherl
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shepherl
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shepherl
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shepherl
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shepherl
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2.7 years ago • updated 2.1 years ago
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BSgenome package for T2T-CHM13v2.0 assembly and SNPlocs package for dbSNP155
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2.6 years ago
Hervé Pagès
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2.6 years ago
shepherl
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2.6 years ago
kayla.interdonato
▴ 160
2
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890
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News:
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ensembl
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ensembldb
2.6 years ago
Benjamin
▴ 30
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805
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2.7 years ago
shepherl
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2.7 years ago
shepherl
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4.1k
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2.9 years ago • updated 2.7 years ago
shepherl
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scMET: Bayesian modelling of DNA methylation heterogeneity at single-cell resolution
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2.7 years ago
kapouranis.andreas
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2.7 years ago
shepherl
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2.8 years ago
shepherl
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5
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2.9 years ago • updated 2.8 years ago
shepherl
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BioC2022 Seattle July 27-29 hybrid conference organizing committee
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3.0 years ago
Levi Waldron
★ 1.1k
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News:
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ensembl
biomaRt
ensembldb
3.0 years ago
mchakiachvili
▴ 20
0
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5
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News:
Final List of Deprecated Packages for Bioc3.14
ExperimentData
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3.1 years ago • updated 2.6 years ago
shepherl
4.1k
8
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Bioconductor 3.14 is Released!
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3.1 years ago
shepherl
4.1k
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2
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1.2k
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News:
Ascona Workshop “Biological systems: from first principles to data-driven modelling and back” 27. 3. - 1. 4. 2022
theory
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ascona
Workshop
3.1 years ago • updated 22 months ago
Wolfgang Huber
★ 13k
3
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1
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817
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News:
Service problems noted
bioconductor
updated 3.1 years ago by
shepherl
4.1k • written 3.1 years ago by
Vincent J. Carey, Jr.
6.7k
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1.1k
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News:
BioC Asia Virtual Meeting, 1-4 November 2021
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3.2 years ago
Peter Hickey
▴ 740
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966
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News:
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3.2 years ago
shepherl
4.1k
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1.1k
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News:
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devel
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3.2 years ago
shepherl
4.1k
2
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News:
BioCAsia Virtual Meeting, 15-18 October 2020
news
conference
event
News
written 4.2 years ago by
Matthew Ritchie
▴ 1000
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Comment: pathview - multiple states
by
Guido Hooiveld
★ 4.1k
According to the the help page of `pathview` (type `?pathview`) the input should be `either vector (single sample) or a matrix-like data (m…
Comment: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data
by
Aaron Lun
★ 28k
You can examine the structure of a `DelayedMatrix` by calling the `showtree()` function. For example: ``` library(scRNAseq) X <- fetchData…
Comment: lfcShrink and alpha value
by
cropero
• 0
Thank you so much! Would that be equivalent to perform `res <- results(dds, contrast = c("conditions", "wild_type_114_2_no_carbon", "wild_t…
Comment: pathview - multiple states
by
Philippine
• 0
Thank you! Here a subset of genes that really works with "ame04145". data <- data.frame( EntrezID = c(100577548, 100577764, 406…
Comment: pathview - multiple states
by
Guido Hooiveld
★ 4.1k
A quick comment after I copied/pasted your code: when using `geneList1` in the 3rd code chunk I do **not** get a nice plot... I rather got …
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Answer: Crossover design with limma
Answer: Different PCA results when using rlog and vst transformations
Answer: contrast matrix design for a continuous variable
A: What's the difference between p.adjust and qvalue?
Answer: DESeq2- merging technical vs biological replicates
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