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Bioconductor
•
reset
1
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21
views
News:
Bioconductor 3.19 is Released!
Release
Bioconductor
Packages
Software
8 hours ago
shepherl
3.8k
0
votes
0
replies
39
views
News:
BioC2024 deadlines approaching
BioC2024
Bioconductor
Community
1 day ago
Maria Doyle
▴ 70
1
vote
0
replies
250
views
Tutorial:
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
bioconductor
Install
12 days ago
BioinfGuru
▴ 30
3
votes
18
replies
2.9k
views
News:
List of Deprecated Packages for Bioc3.18
Deprecation
devel
Bioconductor
Devel
10 months ago • updated 14 days ago
shepherl
3.8k
0
votes
0
replies
81
views
News:
Important Release 3.18 Freeze Announcment
Release
release
Bioconductor
Bioconducto
19 days ago
shepherl
3.8k
0
votes
7
replies
382
views
Internet connection for Bioconductor packages in Rstudio in Iran...
No_internet_connection_Packages
Proxy
Bioconductor
GEOquery
Internet_connection_problem
4 weeks ago • updated 29 days ago
needNGS
• 0
0
votes
2
replies
172
views
bioconductor emailing list
Bioconductor
updated 5 weeks ago by
shepherl
3.8k • written 5 weeks ago by
1427972815
• 0
0
votes
0
replies
139
views
News:
Deadline Extended - BioC2024 Abstracts and Sticker Contest - April 1st!
BioC2024
Conference
Bioconductor
5 weeks ago
Maria Doyle
▴ 70
1
vote
0
replies
175
views
News:
Nominations for Bioconductor Awards 2024!
Recognition
Awards
Bioconductor
Bioc204
5 weeks ago
shepherl
3.8k
1
vote
2
replies
251
views
supportedOrganisms() in goseq producing Error in names(trackIds)
goseq
Bioconductor
rtracklayer
7 weeks ago
thomas
• 0
1
vote
0
replies
267
views
News:
Nominations for Bioconductor Awards 2024!
Recognition
Awards
Bioconductor
Bioc2024
10 weeks ago • updated 8 weeks ago
shepherl
3.8k
0
votes
1
reply
300
views
News:
BioC2024 abstract submission is open!
BioC2024
Conference
Bioconductor
updated 6 weeks ago by
howell
• 0 • written 10 weeks ago by
Maria Doyle
▴ 70
0
votes
0
replies
167
views
News:
BioC2024 registration is now open!
BioC2024
Conference
Bioconductor
Community
8 weeks ago
Maria Doyle
▴ 70
6
votes
11
replies
970
views
Packages don't update, but no error or warning is thrown
Bioconductor
3 months ago • updated 10 weeks ago
gernophil
• 0
0
votes
0
replies
169
views
News:
EuroBioC2024 abstract submission is open!
Conference
Bioconductor
EuroBioC2024
11 weeks ago
Maria Doyle
▴ 70
2
votes
0
replies
236
views
News:
Upholding our core values: a reminder of the Bioconductor Code of Conduct
Bioconductor
11 weeks ago
Maria Doyle
▴ 70
0
votes
1
reply
223
views
Bioconductor: Won't Update to 3.18 with Default Command
Bioconductor
updated 11 weeks ago by
Lluís Revilla Sancho
▴ 730 • written 11 weeks ago by
vanbelj
▴ 30
1
vote
4
replies
425
views
Can't post a question containing code?
Bioconductor
updated 11 weeks ago by
Lluís Revilla Sancho
▴ 730 • written 11 weeks ago by
DS
▴ 10
0
votes
1
reply
200
views
Limitation on single file size and package size when developing Bioc package
packagedevelopment
datalimit
Bioconductor
updated 12 weeks ago by
Hervé Pagès
16k • written 12 weeks ago by
Xin Wang
• 0
0
votes
0
replies
218
views
News:
Note about packages submitted for Bioconductor 3.19
Release
Submission
release
Bioconductor
3 months ago
shepherl
3.8k
2
votes
1
reply
276
views
News:
"Edit" button not working
Bioconductor
Website
SupportSite
updated 3 months ago by
Lori
• 0 • written 3 months ago by
shepherl
3.8k
2
votes
2
replies
306
views
How to contact Bioconductor's test host?
Bioconductor
updated 3 months ago by
Hervé Pagès
16k • written 3 months ago by
Marek Gierlinski
▴ 30
0
votes
4
replies
720
views
Bioconductor installation
Bioconductor
written 3 months ago by
Akhil
• 0
4
votes
3
replies
335
views
Bioconductor code browser time out
Bioconductor
updated 3 months ago by
Mike Smith
★ 6.5k • written 3 months ago by
Marek Gierlinski
▴ 30
3
votes
1
reply
307
views
News:
Bioconductor.org has a new look!
Bioconductor
Website
written 3 months ago by
shepherl
3.8k
0
votes
0
replies
269
views
News:
Online course - FLOW CYTOMETRY DATA ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor
FlowCytometryData
FlowCytometry
4 months ago
info
▴ 10
0
votes
3
replies
1.6k
views
Error in library(oligo) : package or namespace load failed for ‘oligoClasses’
R
oligoClasses
Oligoclass
Bioconductor
Oligo
written 3.2 years ago by
tanya
• 0
1
vote
5
replies
2.1k
views
pd.mogene.2.0st Error Installing in R 3.1.2
oligo
microarray
r
bioconductor
written 9.2 years ago by
chandlerjd58
▴ 10
5
votes
1
reply
434
views
News:
Bioconductor 3.18 is Released!
Packages
Bioconductor
Release
Software
written 6 months ago by
shepherl
3.8k
0
votes
0
replies
238
views
Normalising processed Proteomics data in R
Bioconductor
Proteomics
5 months ago
Joshua
• 0
0
votes
6
replies
2.1k
views
Error when Installing BioConductor Package ('affy')
Bioconductor
Install
affy
updated 5 months ago by
ATpoint
★ 4.1k • written 17 months ago by
laujihen
• 0
2
votes
0
replies
483
views
News:
Bioconductor's Transition Away from Twitter/X
Bioconductor
5 months ago
Maria Doyle
▴ 70
0
votes
0
replies
284
views
News:
CRAN downtime
BiocManager
Bioconductor
5 months ago
shepherl
3.8k
2
votes
4
replies
615
views
Import a Bioconductor package that is only used in a vignette/.Rmd script
Bioconductor
PackageType
BiocStyle
updated 5 months ago by
shepherl
3.8k • written 5 months ago by
lavanilla44
• 0
0
votes
2
replies
779
views
Job:
Bioinformatics Laboratory Head in AI or machine learning (WEHI, Australia)
bioconductor
artificialintelligence
JobPosting
machinelearning
written 8 months ago by
Gordon Smyth
50k
0
votes
3
replies
553
views
Support for installation and usage of TxDb.Hsapiens.UCSC.hg19.knownGene package in R version 4.2.2
Bioconductor
BiocPkgTools
6 months ago • updated 5 months ago
blessybo
• 0
0
votes
1
reply
336
views
Advice needed on package using online databases (fails CHECK when database is down)
Bioconductor
updated 6 months ago by
shepherl
3.8k • written 6 months ago by
Marek Gierlinski
▴ 30
4
votes
10
replies
1.8k
views
Archives prior to 3.15 gone
archive
bioconductor
updated 6 months ago by
shepherl
3.8k • written 19 months ago by
Florian Finkernagel
▴ 30
0
votes
0
replies
361
views
News:
COURSE - Developing R/Bioconductor Packages for Genomics
Bioconductor
PackageTypeData
PackageType
6 months ago
info
▴ 10
2
votes
1
reply
847
views
limma::topTable with adjust.method=NULL is not BH corrected (manual is inconsistent with behavior?)
Bioconductor
biocon
limma
updated 6 months ago by
Gordon Smyth
50k • written 6 months ago by
ningyuan
• 0
2
votes
11
replies
929
views
Error MakeOrgPackagefromNCBI
Bioconductor
updated 12 weeks ago by
Guido Hooiveld
★ 3.9k • written 7 months ago by
cinzia.spagnoli
• 0
5
votes
2
replies
748
views
ComBat_seq function in sva package does not return a matrix
sva
ComBat
ComBat-seq
Bioconductor
ComBat_seq
7 months ago
Federico
▴ 10
0
votes
2
replies
638
views
For R version 4.0.2 and Biconductor version 3.11, clusterProfiler is not working
Bioconductor
clusterProfiler
updated 7 months ago by
James W. MacDonald
65k • written 7 months ago by
nilanjanamani88
• 0
0
votes
2
replies
1.1k
views
Bioconductor version cannot be validated
Bioconductor
updated 5 months ago by
Manuel
• 0 • written 7 months ago by
xlu.cpu
• 0
0
votes
1
reply
3.5k
views
Bioconductor version cannot be validated
Bioconductor
Annotation
Ann
updated 7 months ago by
James W. MacDonald
65k • written 7 months ago by
Aytaç
• 0
0
votes
2
replies
921
views
MACS2 not installing
Bioconductor
8 months ago
alia.sinqua
• 0
0
votes
0
replies
622
views
NAs in tabular output from DNAcopy
Bioconductor
DNAcopy
8 months ago
NewtoBioconductor
• 0
1
vote
4
replies
754
views
running Bioconductor Docker images only works with versions <= 3.15
Bioconductor
8 months ago
patrick.turko
• 0
0
votes
1
reply
387
views
Package "Netboost" is an Unix-only package, how can I install it in R?
Bioconductor
netboost
updated 8 months ago by
ATpoint
★ 4.1k • written 8 months ago by
laura1_z
• 0
1
vote
2
replies
657
views
unable to retrieve certain packages from bioconductor 3.15
Bioconductor
biocondu
updated 8 months ago by
James W. MacDonald
65k • written 8 months ago by
Ashton
▴ 10
50 results • Page
1 of 1
Recent ...
Replies
Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
★ 5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
• 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
ATpoint
★ 4.1k
Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…
Votes
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
Answer: Fold change calculation in Diffbind vs. DESEQ2?
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
Awards
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Rory Stark
★ 5.2k
Popular Question
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tangming2005
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Popular Question
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