Showing : Ensembl • reset
7
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Ensembl plants at annotationHub?
ensembl ensembldb plant arabidopsis thaliana annotationhub
updated 4 hours ago by • 0 • written 5.5 years ago by ★ 4.0k
1
vote
0
replies
233
views
News: Ensembl 111 has been released
Ensembl biomaRt
4 months ago Benjamin ▴ 30
3
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2
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446
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biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl database
ensembl biomaRt
5 months ago henrydionne ▴ 10
1
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2
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633
views
biomaRt not retrieving complete list of functional consequences associated with list of SNPs
ensembl R biomaRt
9 months ago Miguel • 0
0
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2
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1.1k
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Access Ensembl GRCH38 Version 87 Using BiomaRt
biomaRt ensembldb RNA ensembl
updated 13 months ago by ★ 2.0k • written 13 months ago by • 0
5
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3
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1.5k
views
Problem obtaining NCBI gene IDs from Ensembl version 107
biomaRt ensembldb ensembl
19 months ago • updated 16 months ago jamie.gearing ▴ 60
1
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2
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788
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News: Ensembl 108 has been released!
biomaRt ensembldb ensembl
written 19 months ago by ▴ 10
0
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0
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656
views
biomaRt, Ensembl, retrieve "Phenotypes" information
Ensembl biomaRt
21 months ago Hector • 0
7
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5
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7.0k
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biomaRt server error, and mirrors do not help
ensembl biomaRt R
updated 7 months ago by • 0 • written 2.0 years ago by ▴ 40
2
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0
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726
views
News: News:Ensembl 106 has just been released!
ensembl biomaRt ensembldb
2.1 years ago Benjamin ▴ 30
2
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3
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1.5k
views
Ensembl non responsive
ensembl R
2.1 years ago ksci ▴ 20
2
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1
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1.0k
views
Can Rsubread output use Ensembl gene IDs
Ensembl Rsubread
updated 2.1 years ago by 50k • written 2.1 years ago by ▴ 20
9
votes
11
replies
5.9k
views
Where can I find EnsDb.Hsapiens.v105?
Ensembl Rstudio ensembldb AnnotationHub ensdb
updated 9 weeks ago by 3.9k • written 2.3 years ago by ▴ 40
0
votes
3
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1.5k
views
biomaRT getBM() get stuck
biomaRt getbm ensembl
updated 2.3 years ago by ★ 6.5k • written 2.3 years ago by • 0
1
vote
0
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803
views
News: Ensembl 105 has just been released!
ensembl biomaRt ensembldb
2.4 years ago mchakiachvili ▴ 20
15
votes
13
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3.1k
views
celldex ensembl gene annotation issue
SingleR celldex HumanPrimaryCellAtlasData ensembl
updated 2.5 years ago by ▴ 10 • written 2.5 years ago by ▴ 20
0
votes
6
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1.8k
views
Getting paralogus genes from biomart for mouse
biomart biomaRt Ensembl
updated 2.8 years ago by ★ 3.9k • written 2.8 years ago by • 0
0
votes
2
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1.3k
views
News: Ensembl 103 has been released
biomaRt ensembldb Ensembl ensemblVEP Biomart
3.2 years ago • updated 3.0 years ago mchakiachvili ▴ 20
1
vote
1
reply
1.3k
views
topGO question
Ensembl ensembldb
updated 3.5 years ago by 65k • written 3.5 years ago by • 0
0
votes
0
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796
views
News: Ensembl 102 has been released
Ensembl biomaRt BioMar ensembldb
3.5 years ago mchakiachvili ▴ 20
5
votes
8
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14k
views
Ensembl site unresponsive
ensembl biomart
updated 3.1 years ago by • 0 • written 3.6 years ago by ▴ 40
2
votes
11
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6.2k
views
biomaRT connexion problem make failed my unit tests
biomaRt Peer's Certificate Ensembl
updated 3.3 years ago by ★ 6.5k • written 3.6 years ago by • 0
4
votes
17
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2.5k
views
annotation conversion from old microarray to latest Entrez and Ensembl ID
biomaRt annotation Ensembl annotationHub
updated 3.7 years ago by ★ 3.9k • written 3.7 years ago by ▴ 10
0
votes
1
reply
963
views
News: Ensembl 101 hase been released
Ensembl BioMart News
3.7 years ago mchakiachvili ▴ 20
1
vote
3
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2.5k
views
Convert mouse gene ids to hamster gene ids
biomart R ensembl
updated 15 months ago by ★ 3.9k • written 3.8 years ago by • 0
1
vote
0
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1.2k
views
News: ensembldb EnsDb databases for Ensembl release 100 added to AnnotationHub
ensembl annotation ensembldb News
4.0 years ago Johannes Rainer ★ 2.0k
1
vote
0
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798
views
News: Ensembl 100 has been released
biomart ensembl e100 mart news News
4.0 years ago Thomas Maurel ▴ 800
0
votes
4
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1.1k
views
Having a hard time creating a Txi object from an existing Salmon output file to convert transcript file to gene id TPM
Salmon tximport tximportdata ensembl
updated 4.1 years ago by 42k • written 4.1 years ago by • 0
1
vote
2
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1.4k
views
getBM biomart ensembl Error report
biomaRt ensembl
updated 4.1 years ago by ★ 6.5k • written 4.1 years ago by ▴ 10
0
votes
1
reply
1.6k
views
ChIPSeeker with Ensembl IDs
chipseeker Ensembl EnsDb.Mmusculus.v79 ensembldb
4.1 years ago Assa Yeroslaviz ★ 1.5k
0
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2
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2.0k
views
Error in martCheck(mart, c("ensembl", "ENSEMBL_MART_ENSEMBL")) : No dataset selected, please select a dataset first.
biomart mart ensembl
updated 4.1 years ago by 65k • written 4.1 years ago by • 0
0
votes
0
replies
586
views
News: Changes to BioMart in Ensembl release 100 and Ensembl Genomes release 47
biomaRt Ensembl News
4.2 years ago Astrid_Ensembl • 0
4
votes
4
replies
1.7k
views
biomaRt getSequence fails with genomic coordinates
biomart getSequence genomic coordinates ENSEMBL bug report
updated 4.3 years ago by ★ 6.5k • written 4.3 years ago by ▴ 10
0
votes
1
reply
700
views
Question regarding retrieving miRNA sequences from ENSEMBLE
ensembl
updated 4.3 years ago by 42k • written 4.3 years ago by • 0
0
votes
0
replies
732
views
News: Ensembl 99 has been released and renaming of species
biomart ensembl e99 mart news News
4.3 years ago Thomas Maurel ▴ 800
4
votes
11
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2.0k
views
Dealing with duplicated genes in camera gene set testing
limma camera gene set testing ensembl
updated 4.4 years ago by ★ 3.3k • written 4.4 years ago by ▴ 10
1
vote
3
replies
2.3k
views
AnnotationHub timeout for Ensembl Mouse GTF
AnnotationHub Ensembl Mouse AnnotationHub Ensembl
4.4 years ago dmgatti ▴ 10
0
votes
14
replies
1.7k
views
Error while opening Mart with biomaRt package
software error ensembl biomart
4.4 years ago loicborcard01 • 0
0
votes
6
replies
976
views
Anyone else having trouble with biomaRt (Oct 10, 2019)
ensembl biomaRt
updated 4.6 years ago by ★ 6.5k • written 4.6 years ago by ★ 1.4k
0
votes
7
replies
2.8k
views
BioMart does not find mouse homologs of human genes
biomart homolog ortholog gene conversion ensembl
updated 4.6 years ago by 65k • written 4.6 years ago by ▴ 30
0
votes
0
replies
901
views
News: Ensembl 98 has been released and renaming of species
biomart ensembl e98 mart News
4.6 years ago Thomas Maurel ▴ 800
0
votes
1
reply
735
views
Eliminate redundancy in biomaRt (2.38.0) query
biomaRt Ensembl
updated 4.8 years ago by ★ 6.5k • written 4.8 years ago by • 0
0
votes
3
replies
1.4k
views
external_gene_id attribute removed from new biomaRt version
biomaRt Ensembl Ensemblplants
4.8 years ago Didi ▴ 10
1
vote
0
replies
903
views
News: ensembldb EnsDb databases for Ensembl release 97 added to AnnotationHub
annotation ensembldb Ensembl News
4.9 years ago Johannes Rainer ★ 2.0k
1
vote
0
replies
798
views
News: Ensembl 97 has been released
biomart ensembl e97 News
4.9 years ago James Allen ▴ 10
10
votes
8
replies
3.0k
views
Best alternative annotation package to BiomaRt
R biomaRt Ensembl rnaseq
4.9 years ago m93 ▴ 10
0
votes
1
reply
1.0k
views
The query to the BioMart webservice returned an invalid result: biomaRt expected a character string
biomart ensembl R Bioconductor
4.9 years ago lbuo • 0
0
votes
4
replies
1.4k
views
Error message: "Request to BioMart web service failed."
BiocManager biomaRt listMarts() ensembl Biomart
updated 4.9 years ago by ★ 6.5k • written 4.9 years ago by • 0
3
votes
2
replies
1.1k
views
GEO Download - "The query to BioMart webservice returned an invalid result..."
biomart geo software error ensembl
updated 4.9 years ago by ★ 6.5k • written 4.9 years ago by ▴ 10
1
vote
1
reply
1.1k
views
Gene biotype for a given symbol
ensembl
updated 4.9 years ago by ★ 2.0k • written 4.9 years ago by • 0
50 results • Page 1 of 1
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Replies
Comment: Ensembl plants at annotationHub? by Daniele • 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0
Thanks a lot!
Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150
Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by Matthew Thornton ▴ 360
So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!
Votes
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
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