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2.5 years ago • updated 2.2 years ago
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Differences in ENSEMBL => ENTREZID mapping coverage between org.Hs.eg.db and AnnotationHub resources
2.7 years ago • updated 2.6 years ago
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Replies
Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
by
Luca
•
0
Thanks for your time on this, I have also never seen anything quite like this before neither. The only confounding variable I received in t…
Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
by
ATpoint
★
4.8k
If it was global changes then (in my head) why is there two populations of peaks (that to me indicates some sort of confouder) and also, if…
Comment: fast apply on RleList
by
story.benjamin
▴
20
Here's a test data.set if you need:
library(GenomicRanges)
library(rtracklayer)
# gr test
test.gr <- GRanges(seqnames…
Answer: BiocParallel_1.40.1.tar.gz not available
by
shepherl
4.1k
Please try again. We have updated the BiocParallel package and BiocManager should work as expected (pulling 1.40.2 as source). The Landin…
Comment: BiocParallel_1.40.1.tar.gz not available
by
Johan
•
0
Your approach works, but it implies manually rejecting the update of BiocParallel at each use of `BiocManager::install()`, which is pretty …
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