Showing : ensembldb • reset
1
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0
replies
132
views
News: Ensembl 112 has been released.
ensembldb biomaRt ensemblrelease
6 weeks ago Aleena ▴ 30
2
votes
5
replies
370
views
get BM error
ensembldb
updated 9 weeks ago by 66k • written 9 weeks ago by • 0
10
votes
41
replies
6.2k
views
Ensembl plants at annotationHub?
ensembl ensembldb plant arabidopsis thaliana annotationhub
updated 5 weeks ago by • 0 • written 5.6 years ago by ★ 4.0k
0
votes
1
reply
250
views
Convert transcriptomic bam to genomic bam?
ensembldb transcriptome genome coordinateconversion
updated 12 weeks ago by 42k • written 12 weeks ago by ▴ 10
0
votes
1
reply
306
views
Canonical transcripts Mus musculus
TxDb.Mmusculus.UCSC.mm9.knownGene ensembldb GenomicFeatures Mus_musculus
updated 4 months ago by 66k • written 4 months ago by ▴ 10
2
votes
4
replies
496
views
seqlevelsStyle() not working
ensembldb genomei GenomeInfoDb
written 4 months ago by ▴ 70
1
vote
1
reply
295
views
502 error biomaRt getLDS()
ensembldb biomaRt
updated 4 months ago by • 0 • written 4 months ago by ▴ 10
2
votes
3
replies
562
views
NCBI protein to NCBI cDNA (Ensembl conversions would be great as well) in R
Rstudio cDNA ensembldb NCBI
6 months ago R_Page • 0
2
votes
5
replies
1.0k
views
Conversion between different types of bioinformatic forms. (eg. NCBI protein to Ensembl protein) in R
RStudio convert ensembldb NCBI
7 months ago j_denton • 0
0
votes
4
replies
637
views
Retrieve gene ontologies (GO) for genes and a species by REST API
GO ensembldb
8 months ago Rockbar • 0
0
votes
10
replies
910
views
ensembldb::getGenomeTwoBitFile() not working for many species
AnnotationHubSoftware ensembldb
updated 9 months ago by 66k • written 9 months ago by • 0
7
votes
6
replies
4.7k
views
Conversion of UniProt to Ensembl
biomaRt ensembldb UniProt.ws
updated 8 months ago by 700 • written 22 months ago by ▴ 20
3
votes
1
reply
1.7k
views
Mouse to Human Genes using bioconductor
ensembldb
updated 10 months ago by 66k • written 10 months ago by ▴ 10
0
votes
1
reply
535
views
Relationship between gene_id and transcript_id genomic coordinates
Rsubread ensembldb
updated 10 months ago by 66k • written 11 months ago by • 0
0
votes
1
reply
1.7k
views
News: News:Ensembl 110 has been released
ensembldb biomaRt
updated 11 months ago by 42k • written 11 months ago by ▴ 30
0
votes
2
replies
1.2k
views
Access Ensembl GRCH38 Version 87 Using BiomaRt
biomaRt ensembldb RNA ensembl
updated 14 months ago by ★ 2.1k • written 15 months ago by • 0
0
votes
0
replies
758
views
BiomaRt - Problem to access homolog lists
biomaRt ensembldb
16 months ago ginie.dub • 0
1
vote
0
replies
719
views
News: Ensembl 109 has been released
ensembldb
16 months ago Aleena ▴ 30
0
votes
3
replies
1.1k
views
Uniprot IDs and NCBI taxonomy IDs to coding sequences
ensembldb biodbUniprot
updated 17 months ago by 66k • written 17 months ago by • 0
2
votes
4
replies
781
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Successor of genesBy Defunct Function
ensembldb
updated 17 months ago by 16k • written 17 months ago by ★ 1.5k
5
votes
3
replies
1.6k
views
Problem obtaining NCBI gene IDs from Ensembl version 107
biomaRt ensembldb ensembl
20 months ago • updated 17 months ago jamie.gearing ▴ 60
1
vote
3
replies
918
views
Convert Chromosome postion to gene symbol
biomaRt ensembldb
18 months ago mbansal • 0
2
votes
3
replies
1.9k
views
Packages dependent on rtracklayer fail: ERROR: lazy loading failed, unable to load shared object rtracklayer.so
SingleCellMultiModal ensembldb rtracklayer Annotation
updated 17 months ago by • 0 • written 19 months ago by ▴ 10
1
vote
2
replies
812
views
News: Ensembl 108 has been released!
biomaRt ensembldb ensembl
written 20 months ago by ▴ 10
0
votes
5
replies
2.2k
views
Error when annotating ENSEMBLE transcript IDs from chicken annotation DB
R ensembldb Annotation
updated 20 months ago by ★ 4.0k • written 20 months ago by ▴ 30
0
votes
4
replies
1.2k
views
GO data for fgsea: should ensembl data be augmented to contain parent terms?
biomaRt GO ensembldb fgsea
21 months ago dario.beraldi • 0
2
votes
3
replies
2.4k
views
GSEA only returning 1 GO term - unable to map Ensembl IDs with decimals?
AnnotationDbi GO clusterProfiler enrichplot ensembldb
updated 21 months ago by ▴ 130 • written 21 months ago by ▴ 10
0
votes
1
reply
745
views
getBM Error with certain attribute combinations
biomaRt ensembldb
updated 22 months ago by ★ 4.2k • written 22 months ago by • 0
0
votes
3
replies
1.4k
views
Differences in ENSEMBL => ENTREZID mapping coverage between org.Hs.eg.db and AnnotationHub resources
AnnotationHub org.Hs.eg.db ensembldb
23 months ago • updated 22 months ago sandmann.t ▴ 70
1
vote
0
replies
860
views
News: Ensembl 107 has been released
ensembldb
23 months ago Aleena ▴ 30
0
votes
1
reply
1.1k
views
bioMart Sscrofa_gene_ensembl getBM() paralogues ERROR
biomaRt ensembldb paralogues
updated 24 months ago by ★ 1.6k • written 24 months ago by • 0
0
votes
3
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3.1k
views
Can't Install ensembldb and EnsDb.Hsapiens.v86
installation EnsDb.Hsapiens.v86 Bioconductor package ensembldb
24 months ago elmfinds • 0
2
votes
0
replies
743
views
News: News:Ensembl 106 has just been released!
ensembl biomaRt ensembldb
2.2 years ago Benjamin ▴ 30
2
votes
2
replies
1.2k
views
ensembldb to make the EnsDb for Human Version 105 using 'fetchTablesFromEnsembl' I'm on day two, can it be sped up?
ensembldb
2.3 years ago Matthew Thornton ▴ 370
0
votes
2
replies
2.8k
views
How to get the rsID of 4 million SNPA
ensembldb SNP SNPData genomes
written 2.3 years ago by • 0
9
votes
11
replies
6.3k
views
Where can I find EnsDb.Hsapiens.v105?
Ensembl Rstudio ensembldb AnnotationHub ensdb
updated 3 months ago by 3.9k • written 2.4 years ago by ▴ 40
0
votes
2
replies
1.5k
views
Can't convert dog ensembl IDs into gene names
biomaRt ensembldb
updated 2.5 years ago by ★ 4.2k • written 2.5 years ago by • 0
0
votes
3
replies
1.4k
views
Error: package or namespace load failed for 'EnsDb.Mmusculus.v79'
EnsDb.Mmusculus.v79 EnsDb.Mmusculus.v75 ensembldb
updated 2.5 years ago by ★ 2.1k • written 2.5 years ago by • 0
1
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0
replies
826
views
News: Ensembl 105 has just been released!
ensembl biomaRt ensembldb
2.5 years ago mchakiachvili ▴ 20
0
votes
1
reply
1.1k
views
How to get Cytogenetic band for muscles gene by using Biomart or other tools in R
Annotation biomaRt ensembldb
written 2.6 years ago by • 0
10
votes
18
replies
3.0k
views
ensembldb support for Ensembl's transcript_name column
ensembldb
updated 2.6 years ago by 16k • written 2.7 years ago by 42k
0
votes
3
replies
1.2k
views
Problem select / ensembl package
ensembldb
2.7 years ago yinnahm • 0
2
votes
3
replies
1.8k
views
biomart query in R is not matching ensembl website - missing results
ensembldb biomaRt
updated 2.7 years ago by ★ 6.5k • written 2.7 years ago by • 0
0
votes
3
replies
1.1k
views
Error using old ensembldb annotations with R 4.0 +
anno EnsDb.Hsapiens.v79 ensDb.HSapiens.v92 AnnotationDbi ensembldb
2.9 years ago rbenel ▴ 40
1
vote
9
replies
2.0k
views
How to filter EnsDb into another EnsDb object instead of GRange?
ens ensembldb EnsDb.Hsapiens.v86 EnsDb.Rnorvegicus.v75
3.1 years ago Ahdee ▴ 50
1
vote
0
replies
1.1k
views
News: Ensembl 104 has just been released!
ensembldb biomaRt
3.1 years ago mchakiachvili ▴ 20
2
votes
1
reply
1.6k
views
Retrieve gene description with ensembldb
biomaRt ensembldb AnnotationData
updated 3.2 years ago by ★ 2.1k • written 3.2 years ago by ▴ 510
1
vote
2
replies
1.2k
views
Unable to use ensembldb's "ensDbFromGff()" function on .gff file from NCBI
ensembldb RNASeq
3.2 years ago Torkel • 0
0
votes
2
replies
1.4k
views
News: Ensembl 103 has been released
biomaRt ensembldb Ensembl ensemblVEP Biomart
3.4 years ago • updated 3.2 years ago mchakiachvili ▴ 20
3
votes
2
replies
2.7k
views
Mapping Ensemble IDs with version numbers using ensembl annotation packages
AnnotationDbi ensembldb
3.4 years ago Ezgi ▴ 60
50 results • Page 1 of 1
Recent ...
Replies
Comment: Issues with retrieving mouse SNP dataset: biomaRt error: looks like we're connec by Svitlana • 0
Thank you so much! The issue has been resolved.
Answer: BiomaRt listAttributes - which are external ? by James W. MacDonald 66k
Mike Smith will probably be along in a while with actual information, but in the interim do note that you can cross-reference using the onl…
Comment: SeSAMe DMR for EPIC V2 by luca.s ▴ 50
Thank you, that was indeed the case. I fed the function with the data containing the replicate probes collapsed by mean and this caused the…
Comment: SeSAMe DMR for EPIC V2 by zhouwanding ▴ 20
Update: The new 1.23.8 should have fixed this issue. Let me know if it still doesn't.
Comment: modelGeneVarByPoisson error selecting bandwidth automatically by Lluís Revilla Sancho ▴ 730
Yes, the examples run fine. I only get some warnings (I activated that check in my environment): ``` Warning messages: 1: In seq.default(f…
Votes
Comment: SeSAMe DMR for EPIC V2
A: DESeq2: Is it necessary to include all terms and interactions in LRT tests?
A: Unable to download "BSgenome.Hsapiens.UCSC.hg19" package using R 3.6.3 on Window
Unable to download "BSgenome.Hsapiens.UCSC.hg19" package using R 3.6.3 on Windows 10 x64
Comment: EnsDb: bad_weak_ptr
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