Bioconductor Genome

Showing : genome • reset

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210

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ensembldb transcriptome genome coordinateconversion

updated 8 weeks ago by Michael Love 42k • written 9 weeks ago by saadmurtazakhan ▴ 10

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678

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build genome

14 months ago Dmitry • 0

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2.1k

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Genome bwamem ChIPSeqData index

updated 15 months ago by ATpoint ★ 4.2k • written 15 months ago by Maka • 0

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1.0k

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Alignment Genome

2.6 years ago Charles Plessy ▴ 180

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1.3k

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Genome readVcf VariantAnnotation

3.2 years ago naive • 0

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1.1k

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Genome GWASdata

3.3 years ago Jocelyn • 0

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1.0k

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annotation genome hg38 TxDb.Hsapiens.UCSC.hg38.knownGene BSgenome.Hsapiens.UCSC.hg38

updated 4.3 years ago by kayla.interdonato ▴ 160 • written 4.3 years ago by jam526 • 0

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1.1k

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Gviz R UCSC Tracks genome locusplot

updated 4.6 years ago by Robert Ivanek ▴ 730 • written 4.6 years ago by s.koturan • 0

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937

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single cell bioinformatics genome sequencing Job

4.7 years ago jmaanaki • 0

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2.0k

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annotation gff3 gff genome

updated 4.7 years ago by Michael Lawrence ★ 11k • written 4.7 years ago by mictadlo ▴ 10

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2.7k

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txdb genome exons

updated 4.8 years ago by Martin Morgan 25k • written 4.8 years ago by Bogdan ▴ 670

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866

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single cell genome cancer Job

5.0 years ago jmaanaki • 0

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901

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genome novel package release

updated 5.3 years ago by James W. MacDonald 66k • written 5.3 years ago by pertille • 0

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1.2k

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multiplealignment genome

5.7 years ago Giuseppe ▴ 20

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1.3k

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r build genome chicken-sheme

8.6 years ago pertille • 0

15 results • Page 1 of 1

Recent ...

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Comment: How to compare subset of samples from VCF files by Gordon Smyth 50k

Welcome to Bioconductor support. Did you know that you can delete your old postings if they haven't received an answer yet? Instead of ap…

Comment: How to compare subset of samples from VCF files by Marco • 0

Here's the vcf file as code block ``` ##fileformat=VCFv4.2 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth"> ##FOR…

Comment: Gviz and custom database by James W. MacDonald 66k

The vignette for `Gviz` says you can use a `DNAStringSet`, generated using `Biostrings`. Have you tried that?

Comment: Gviz and custom database by luigi.faino • 0

Dear, this is not what I need. I need to transform a fasta sequence in a genome track usable in Gviz. L

Answer: Gviz and custom database by James W. MacDonald 66k

https://bioconductor.org/packages/release/bioc/vignettes/txdbmaker/inst/doc/txdbmaker.html

Votes

Answer: makeExampleDESeqDataSet using pilot data

Answer: Checking/updating package versions

Answer: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)?

convert data frame of Entrez IDs to Gene Symbols

Answer: LRT, pairwise comparisons and p-value adjustment

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