Bioconductor Dnaseq

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423

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DESeq2 NanoporeRNASeq DNASeq

updated 8 months ago by Michael Love 43k • written 8 months ago by Dot • 0

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864

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DNASeq CNEr

3.3 years ago Md Abrar • 0

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4.1k

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DNASeq rstudio fasta Biostrings csv

3.7 years ago HELEN • 0

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981

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DNASeq RNASeq SingleCell

3.7 years ago camp ▴ 10

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814

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GenomicInteractions Basic4Cseq DNASeq GenomicFiles

3.8 years ago koushik • 0

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1.2k

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cn.mops dnaseq bioinformatics

6.7 years ago Cased • 0

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1.9k

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dnacopy dnaseq genomic cn.mops cnv

updated 6.8 years ago by Günter Klambauer ▴ 540 • written 6.8 years ago by Cased • 0

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1.3k

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dnaseq pathway analysis protein biomarkers

7.2 years ago emadelhewihy • 0

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1.5k

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dnaseq rtracklayer paired-end reads

7.8 years ago zwfanwz678 • 0

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1.3k

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footprinting centipede atac-seq dnaseq

8.1 years ago rbronste ▴ 60

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1.5k

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exome dnaseq WES

8.9 years ago arvand.akbari • 0

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2.1k

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job jobs rnaseq chipseq dnaseq Job

9.6 years ago Rory Stark ★ 5.2k

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1.7k

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biostrings subsetting View dnastring dnaseq

updated 9.7 years ago by James W. MacDonald 68k • written 9.7 years ago by arado1 • 0

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1.8k

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r ggbio ggplot2 dnaseq genomicranges

updated 9.8 years ago by arfranco ▴ 130 • written 9.8 years ago by fathniz • 0

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6.9k

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Chipseq DNAseq ATAC bayespeak narrowpeaks

updated 9.9 years ago by Gordon Smyth 52k • written 9.9 years ago by samuel collombet ▴ 140

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9.5k

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deseq2 dnaseq

updated 10.6 years ago by Michael Love 43k • written 10.6 years ago by hughes.drew ▴ 100

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1.7k

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DNASeq Cancer DNASeq Cancer

13.4 years ago Martin Morgan 25k

17 results • Page 1 of 1

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Comment: Differing results with DESeq2 by JKim • 0

I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for gene expressio…

Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k

Your gene IDs are things like this: `Mpyr-NLJ1B.v3.hap1.scaffold1.g290550`, and the genes in your term2gene table are things like this: `Mp…

Answer: RNA-seq input to GRaNIE by James W. MacDonald 68k

This is [covered in the vignette.][1] [1]: https://bioconductor.org/packages/release/bioc/vignettes/GRaNIE/inst/doc/GRaNIE_packageDe…

Answer: Help using reduceSimMatrix with a custom annotation by sergisayolspuig ▴ 80

Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…

Answer: Analyzing TnSeq data with DESeq2 by cold.wolverine.arku • 0

That's a great use case of DESeq2! Even though it's not specifically tailored for TnSeq data, your approach to normalize and run explorator…

Votes

A: Unbalanced experiment with multiple samples from each patient.

A: Understanding contrasts limma

Answer: ROAST for small sets

A: conceptual question about FDR, FDR adjusted p-value and q-value

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