Showing : dnacopy • reset
0
votes
0
replies
129
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DNAcopy segment function not reproducible even when setting seed
DNAcopy
10 weeks ago BID • 0
0
votes
0
replies
674
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NAs in tabular output from DNAcopy
Bioconductor DNAcopy
9 months ago NewtoBioconductor • 0
0
votes
0
replies
499
views
do DNAcopy do copy number segmentation need separate between tumor samples and mormal samples
DNAcopy
2.4 years ago xingyu • 0
0
votes
1
reply
2.0k
views
BiocManager::install("DNAcopy") failed to install in r
DNAcopy R
updated 2.6 years ago by ★ 6.5k • written 2.6 years ago by • 0
0
votes
11
replies
1.5k
views
Create `Copy Number Array' Data Object error
DNAcopy
3.5 years ago El • 0
0
votes
3
replies
1.7k
views
"genomdat must be numeric"error in DNAcopy Package (Solved)
DNAcopy Varscan
updated 3.5 years ago by • 0 • written 6.3 years ago by • 0
0
votes
0
replies
641
views
don't get an output of wigtoRangedData's function HMMcopy Package for detect CNV
HMMcopy DNAcopy
3.5 years ago El • 0
2
votes
3
replies
1.5k
views
Doubt about WL in cn.mops
dnacopy dnaseq genomic cn.mops cnv
updated 5.9 years ago by ▴ 540 • written 5.9 years ago by • 0
0
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1
reply
2.5k
views
change plot title in DNAcopy multiple plot.type="s"
DNAcopy
updated 6.6 years ago by ▴ 680 • written 6.6 years ago by ▴ 60
0
votes
0
replies
808
views
plot multiple chromosomes from plot.type="c" to PDF files automatically in RStudio (RMD document)
dnacopy
6.6 years ago Stephane Plaisance | VIB | ▴ 60
0
votes
3
replies
1.5k
views
wrong output of DNAcopy::segment() for chr. with empty copy number data
DNAcopy dnacopy
6.8 years ago Alexandre Kuhn ▴ 20
0
votes
3
replies
1.5k
views
Analysing TCGA Level 3 Copy Number Data Location of markers in the genome
TCGA Cancer dnacopy segmentation
updated 6.9 years ago by ▴ 130 • written 6.9 years ago by • 0
1
vote
2
replies
1.3k
views
DNAcopy segmentation issue: min.width argument not working?
dnacopy segmentation CBS
updated 7.3 years ago by ▴ 30 • written 7.3 years ago by ▴ 10
2
votes
4
replies
2.4k
views
Visualizing CopywriteR's segmentation output in IGV
copywriter dnacopy
updated 8.3 years ago by ▴ 170 • written 8.3 years ago by • 0
0
votes
2
replies
1.1k
views
could not find function "DNAcopy"
dnacopy
updated 8.3 years ago by 25k • written 8.3 years ago by • 0
0
votes
1
reply
1.6k
views
CNAnorm ploidy help
CNAnorm DNAcopy
updated 8.5 years ago by • 0 • written 8.5 years ago by ▴ 40
0
votes
0
replies
932
views
Get data frame of CNV calls from Seglist object
seglist snapcgh dnacopy
8.8 years ago Cian Murphy ▴ 40
0
votes
1
reply
1.3k
views
"genomdat must be numeric" error form DNACopy package
software error dnacopy crlmm
updated 8.9 years ago by 66k • written 9.0 years ago by • 0
0
votes
0
replies
1.4k
views
DNAcopy default settings and SNP6.0 arrays
SNP DNAcopy SNP6.0 CNV
9.4 years ago giovanni.dario • 0
1
vote
1
reply
1.3k
views
Installation of DNAcopy was absolutly done in R2.15?
installation dnacopy
9.4 years ago vov-x • 0
0
votes
4
replies
1.8k
views
DNACopy Question what is passed to the maploc argument.
DNAcopy DNAcopy
updated 9.8 years ago by ★ 6.8k • written 9.8 years ago by ▴ 30
0
votes
0
replies
1.0k
views
DNA Copy CNA function , what do you pass to maploc argument?
DNAcopy DNAcopy
9.8 years ago Nikolas Balanis ▴ 30
0
votes
3
replies
3.6k
views
Error installing impute package
GUI impute DNAcopy GUI impute DNAcopy
updated 10.0 years ago by ★ 8.2k • written 10.0 years ago by ▴ 80
0
votes
0
replies
1.2k
views
CGHCall problems
aCGH probe DNAcopy aCGH CGHcall aCGH probe DNAcopy aCGH CGHcall
10.8 years ago Guest User ★ 13k
0
votes
0
replies
1.2k
views
readPositionalInfo in snapCGH for preparing CNA files for DNAcopy
aCGH DNAcopy aCGH snapCGH aCGH DNAcopy aCGH snapCGH
10.9 years ago Guest User ★ 13k
0
votes
1
reply
1.7k
views
Error in sort(abs(diff(genomdat)))[1:n.keep]
DNAcopy DNAcopy
updated 11.0 years ago by ▴ 40 • written 11.0 years ago by ★ 13k
0
votes
3
replies
1.4k
views
Error installing (some) Bioconductor packages on Mac OSX under R-3.0.0?
GUI impute DNAcopy GUI impute DNAcopy
updated 11.1 years ago by ★ 8.2k • written 11.1 years ago by ★ 3.0k
0
votes
1
reply
1.4k
views
Can we use DNAcopy to analyse Copy Number Viaration using next generation sequencing data generated by eigher Ion PGM or Illumina MiSeq
Sequencing DNAcopy Sequencing DNAcopy
updated 11.4 years ago by ▴ 210 • written 11.4 years ago by ★ 13k
0
votes
5
replies
1.7k
views
bioconductor on EMR / mapreduce
DNAcopy DNAcopy
updated 11.7 years ago by ★ 8.2k • written 11.7 years ago by ▴ 70
0
votes
1
reply
1.6k
views
DNAcopy for CNV in SNP Affy 6.0
SNP affy DNAcopy SNP affy DNAcopy
12.2 years ago Ekta Jain ▴ 370
0
votes
1
reply
1.2k
views
DNAcopy for CNV in SNP Affy 6.0
DNAcopy DNAcopy
updated 12.2 years ago by 6.7k • written 12.2 years ago by ▴ 370
0
votes
0
replies
1.1k
views
aCGH segmentation with DNAcopy
aCGH probe DNAcopy aCGH aCGH probe DNAcopy aCGH
12.2 years ago Emilie Lalonde ▴ 10
0
votes
1
reply
1.3k
views
CNTools error message
CGH probe DNAcopy CGH probe DNAcopy
updated 12.4 years ago by 25k • written 12.4 years ago by ▴ 280
0
votes
2
replies
1.2k
views
questions on cghMCR package
DNAcopy cghMCR DNAcopy cghMCR
updated 12.4 years ago by 25k • written 12.4 years ago by ▴ 280
0
votes
0
replies
1.0k
views
Fwd: seeking help on cghMCR pleeeease
DNAcopy cghMCR DNAcopy cghMCR
12.4 years ago nac ▴ 280
0
votes
0
replies
985
views
seeking help on cghMCR pleeeease
DNAcopy cghMCR DNAcopy cghMCR
12.5 years ago nac ▴ 280
0
votes
0
replies
1.0k
views
Help on cghMCR units of gapAllowed
DNAcopy cghMCR DNAcopy cghMCR
12.5 years ago nac ▴ 280
0
votes
2
replies
1.6k
views
Tuning segment() in DNAcopy package to get more segments on each chromosome
DNAcopy UNDO DNAcopy UNDO
updated 12.6 years ago by 21k • written 12.6 years ago by ▴ 110
0
votes
0
replies
1.2k
views
cghMCR package:Is it possible to find MCR by not usingDNAcopy object?
PROcess DNAcopy cghMCR PROcess DNAcopy cghMCR
12.7 years ago viritha kaza ▴ 580
0
votes
1
reply
1.4k
views
cghMCR package:Is it possible to find MCR by not using DNAcopy object?
DNAcopy cghMCR DNAcopy cghMCR
updated 12.7 years ago by ▴ 20 • written 12.7 years ago by ▴ 580
0
votes
1
reply
1.1k
views
DNAcopy segment() Infinite Loop
DNAcopy DNAcopy
updated 12.9 years ago by ▴ 40 • written 12.9 years ago by ★ 1.5k
2
votes
1
reply
1.6k
views
DNAcopy
DNAcopy copynumber DNAcopy copynumber
updated 13.0 years ago by 21k • written 13.0 years ago by ▴ 140
0
votes
2
replies
1.4k
views
DNA copy ploting function
probe DNAcopy probe DNAcopy
13.0 years ago nac ▴ 280
0
votes
1
reply
907
views
[Fwd: Problem with DNAcopy plot function ??]
DNAcopy DNAcopy
updated 13.0 years ago by ★ 13k • written 13.0 years ago by ▴ 280
0
votes
0
replies
779
views
[Fwd: Problem with DNAcopy plot function ??]
DNAcopy DNAcopy
13.0 years ago nac ▴ 280
0
votes
0
replies
849
views
How to get defenitive Amp/del/nochange using DNAcopy package?
graph DNAcopy graph DNAcopy
13.1 years ago Chiho Kwon ▴ 10
0
votes
1
reply
945
views
DNAcopy installation error
DNAcopy DNAcopy
updated 14.3 years ago by 25k • written 14.3 years ago by ▴ 10
0
votes
0
replies
1.1k
views
DNAcopy
aCGH impute DNAcopy aCGH snapCGH CGHcall aCGH impute DNAcopy aCGH snapCGH CGHcall
14.3 years ago Daniel Rico ▴ 110
0
votes
0
replies
964
views
DNAcopy
aCGH DNAcopy aCGH aCGH DNAcopy aCGH
14.3 years ago Anguraj Sadanandam ▴ 10
0
votes
2
replies
1.1k
views
Reproducibility of DNAcopy segmentation
DNAcopy DNAcopy
updated 14.4 years ago by 21k • written 14.4 years ago by ▴ 20
50 results • Page 1 of 1
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Replies
Comment: How to compare subset of samples from VCF files by Gordon Smyth 50k
Welcome to Bioconductor support. Did you know that you can delete your old postings if they haven't received an answer yet? Instead of ap…
Comment: How to compare subset of samples from VCF files by Marco • 0
Here's the vcf file as code block ``` ##fileformat=VCFv4.2 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth"> ##FOR…
Comment: Gviz and custom database by James W. MacDonald 66k
The vignette for `Gviz` says you can use a `DNAStringSet`, generated using `Biostrings`. Have you tried that?
Comment: Gviz and custom database by luigi.faino • 0
Dear, this is not what I need. I need to transform a fasta sequence in a genome track usable in Gviz. L
Answer: Gviz and custom database by James W. MacDonald 66k
https://bioconductor.org/packages/release/bioc/vignettes/txdbmaker/inst/doc/txdbmaker.html
Votes
Answer: makeExampleDESeqDataSet using pilot data
Answer: Checking/updating package versions
Answer: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)?
convert data frame of Entrez IDs to Gene Symbols
Answer: LRT, pairwise comparisons and p-value adjustment
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