Bioconductor Alternative splicing

Showing : alternative splicing • reset

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697

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psichomics SUPPA Splicing Alternative Splicing Retained Introns

3.6 years ago noahhelton98 ▴ 20

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895

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sgseq alternative splicing rna seq

updated 4.5 years ago by Leonard Goldstein ▴ 220 • written 4.5 years ago by 116100016 • 0

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785

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rna seq SGSeq Alternative splicing

updated 4.6 years ago by Leonard Goldstein ▴ 220 • written 4.6 years ago by 116100016 • 0

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1.0k

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aspli readCounts rna-seq alternative splicing AS

5.3 years ago fernandalpcosta ▴ 10

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900

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R alternative splicing ASpli AsDiscover

5.4 years ago abdul rawoof ▴ 60

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958

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rnaseq alternative splicing ASpli

5.5 years ago nicolas.guyon2 • 0

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1.5k

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rna-seq alternative splicing SGSeq

5.5 years ago andrea.bast • 0

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1.2k

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maser R rMATs alternative splicing

5.7 years ago Reza • 0

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1.3k

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limma rna-seq alternative splicing

updated 6.6 years ago by Gordon Smyth 50k • written 6.6 years ago by lirongrossmann ▴ 80

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1.2k

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limma voom alternative splicing

8.2 years ago osa.zuta ▴ 40

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2.7k

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sgseq splicing alternative splicing

updated 8.2 years ago by Leonard Goldstein ▴ 220 • written 8.2 years ago by vakul.mohanty ▴ 20

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1.1k

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deseq2 dexseq alternative splicing

updated 8.5 years ago by Michael Love 42k • written 8.5 years ago by sahiilseth • 0

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2.2k

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DEXSeq DESeq2 dexseq deseq2 alternative splicing

8.6 years ago Fahmi Nazarie • 0

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1.9k

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dexseq alternative splicing exon skipping

updated 9.2 years ago by Simon Anders ★ 3.7k • written 9.2 years ago by ebadr • 0

14 results • Page 1 of 1

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Comment: Ensembl plants at annotationHub? by Daniele • 0

Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30

Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…

Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0

Thanks a lot!

Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150

Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by Matthew Thornton ▴ 360

So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!

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Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?

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