Bioconductor Splicing

Showing : Splicing • reset

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250

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splicing limma edgeR

updated 8 weeks ago by Gordon Smyth 50k • written 8 weeks ago by scoops_streams_06 • 0

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521

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transcriptome splicing assembly

updated 18 months ago by James W. MacDonald 65k • written 18 months ago by Marianna ▴ 20

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862

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splicing Exon featureCounts subread DEXSeq

24 months ago • updated 23 months ago NIK • 0

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697

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psichomics SUPPA Splicing Alternative Splicing Retained Introns

3.6 years ago noahhelton98 ▴ 20

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2.2k

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edger normalization differential exon usage splicing

updated 3.6 years ago by Yunshun Chen ▴ 840 • written 3.6 years ago by oakhamwolf • 0

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1.1k

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DEXSeq Splicing Exon Usage

4.3 years ago gunjan.dikshit • 0

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1.1k

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ciri splicing splicesites

updated 4.3 years ago by lhddiallo • 0 • written 6.0 years ago by csijst • 0

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828

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junctionseq splicing RNAseq DEXSeq

4.5 years ago stuart ▴ 10

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1.6k

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genomicalignments splicing coverage

updated 4.6 years ago by Michael Lawrence ★ 11k • written 7.1 years ago by rasi1983 ▴ 10

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907

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dexseq splicing sqtl qtl

updated 5.3 years ago by Alejandro Reyes ★ 1.9k • written 5.3 years ago by rtunney2 • 0

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1.7k

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deseq2 splicing

updated 6.0 years ago by Michael Love 42k • written 6.0 years ago by yannickwurm • 0

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1.6k

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DRIMSeq splicing differential isoform usage

updated 7.3 years ago by Gosia Nowicka ▴ 90 • written 7.3 years ago by kristoffer.vittingseerup ▴ 20

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2.7k

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sgseq splicing alternative splicing

updated 8.2 years ago by Leonard Goldstein ▴ 220 • written 8.2 years ago by vakul.mohanty ▴ 20

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1.8k

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microarray splicing

updated 8.3 years ago by Sonika Tyagi ▴ 20 • written 9.6 years ago by gv ▴ 40

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1.5k

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DEXSeq splicing python SAM

8.6 years ago Fiona ▴ 70

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2.2k

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SGSeq analyzeFeatures Splicing

9.4 years ago Paolo Guarnieri ▴ 20

16 results • Page 1 of 1

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Comment: Ensembl plants at annotationHub? by Daniele • 0

Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30

Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…

Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0

Thanks a lot!

Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150

Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by Matthew Thornton ▴ 360

So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!

Votes

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?

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