Bioconductor Rna seq

Showing : rna seq • reset

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2.6k

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deseq2 mahattan plot RNA Seq

updated 3.6 years ago by bernatgel ▴ 150 • written 4.6 years ago by adeler001 • 0

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3.3k

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batch effect limma rna seq DE

updated 4.1 years ago by Steve Lianoglou ★ 13k • written 4.1 years ago by svlachavas ▴ 830

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659

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RNA seq cpm

updated 4.1 years ago by Kevin Blighe ★ 3.9k • written 4.1 years ago by isabel.pieterse • 0

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896

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sgseq alternative splicing rna seq

updated 4.5 years ago by Leonard Goldstein ▴ 220 • written 4.5 years ago by 116100016 • 0

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905

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edger RNA Seq

updated 4.5 years ago by James W. MacDonald 65k • written 4.5 years ago by abf ▴ 30

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500

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rna seq

4.5 years ago adeler001 • 0

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786

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rna seq SGSeq Alternative splicing

updated 4.6 years ago by Leonard Goldstein ▴ 220 • written 4.6 years ago by 116100016 • 0

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553

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deseq2 likelihood ratio rna seq wald test

updated 4.7 years ago by Michael Love 42k • written 4.7 years ago by adeler001 • 0

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955

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volcano plot rna seq

updated 4.7 years ago by Michael Love 42k • written 4.7 years ago by adeler001 • 0

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1.3k

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limma voom RNA Seq Time-course experiments

updated 4.9 years ago by Aaron Lun ★ 28k • written 4.9 years ago by mahes.muniandy • 0

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979

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RNA seq wgcna

updated 5.0 years ago by Peter Langfelder ★ 3.0k • written 5.0 years ago by agustin.gonvi ▴ 20

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1.9k

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rna seq trimmomatic trimming adapter trimming paired analysis

5.0 years ago Mozart ▴ 30

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1.6k

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heatmap.2 hierarchical clustering microarray RNA seq DEG

6.3 years ago lawarde.ankita1 ▴ 30

13 results • Page 1 of 1

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Comment: Ensembl plants at annotationHub? by Johannes Rainer ★ 2.0k

Dear Daniele, for which Ensembl release would you need the data? the most recent is 112, but if you used a different version before it wou…

Comment: Ensembl plants at annotationHub? by Daniele • 0

Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30

Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…

Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0

Thanks a lot!

Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150

Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…

Votes

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?

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Popular Question to Johannes Rainer ★ 2.0k