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aspli
•
reset
0
votes
0
replies
13
views
Error in xj[i] : invalid subscript type 'list' when running jDUreport on Aspli
ASpli
9 hours ago
Randall
• 0
0
votes
0
replies
117
views
I am trying to detect alternative splicing.
ASpli
5 weeks ago
Sebashish
• 0
0
votes
0
replies
286
views
Error in set(x, j = name, value = value) : Supplied 52 items to be assigned to 55 items of column 'locus'. If you wish to 'recycle' the RHS please…
ASpli
3 months ago
vipul14
• 0
5
votes
6
replies
902
views
ASpli checks fail on Linux due to missing dependency to statmod
ASpli
updated 10 months ago by
Gordon Smyth
50k • written 10 months ago by
martin.grigorov
▴ 10
0
votes
1
reply
677
views
Splicing analysis with ASpli package gives an error when I use binGenome function.
S4Vectors
Aspli
updated 15 months ago by
Sophie
• 0 • written 16 months ago by
salvocomplicazioni1
• 0
0
votes
3
replies
3.5k
views
ASpli: Error in h(simpleError(msg, call)) : error in evaluating the argument 'x' in selecting a method for function 'sort': 'start' or 'end' canno…
ASpli
updated 8 months ago by
andresrabinovich
• 0 • written 19 months ago by
thithusuong.nguyen
• 0
0
votes
0
replies
633
views
ASpli package gives an error in jCounts function and suggest a parameter change in granges()
ASpli
alterna
AlternativeSplicing
2.3 years ago
hamza_karakurt
▴ 60
6
votes
10
replies
1.7k
views
ASpli: jCounts() Error in av[at] <- a[at] : NAs are not allowed in subscripted assignments
ASpli
updated 2.7 years ago by
Ines
• 0 • written 3.0 years ago by
Emma
▴ 20
0
votes
1
reply
1.6k
views
ASpli: Error in h(simpleError(msg, call))
ASpli
updated 22 months ago by
lincango_marco
• 0 • written 2.8 years ago by
Dmitri
• 0
1
vote
3
replies
1.1k
views
ASpli error message
ASpli
updated 2.3 years ago by
hamza_karakurt
▴ 60 • written 3.1 years ago by
stephen66
▴ 50
1
vote
11
replies
2.0k
views
Aspli: error with gbCounts
Aspli
ASpli
3.2 years ago • updated 3.1 years ago
jbono
▴ 10
0
votes
1
reply
816
views
ASpli package function plotGenomicRegions fails in windows
ASpli
plotGenomicRegions
updated 3.8 years ago by
emancini
▴ 50 • written 4.9 years ago by
mgdrnl
• 0
0
votes
1
reply
627
views
function plotgenomicregions does not appear in the aspli package installed in windows
software error
aspli
plotgenomicregions
windows
4.1 years ago
joanmarquez21
• 0
3
votes
2
replies
1.1k
views
ASpli readCounts never ends!
aspli
readCounts
rna-seq
alternative splicing
AS
5.3 years ago
fernandalpcosta
▴ 10
0
votes
0
replies
911
views
ASpli AsDiscover error
R
alternative splicing
ASpli
AsDiscover
5.4 years ago
abdul rawoof
▴ 60
0
votes
0
replies
980
views
ASpli Package: Problem with readCounts() function, no Junctions analysed.
rnaseq
alternative splicing
ASpli
5.5 years ago
nicolas.guyon2
• 0
0
votes
0
replies
833
views
ASPLI (RNAseq AS) R package error
rnaseq
ASPLI
5.9 years ago
dina.hesham139
• 0
0
votes
0
replies
1.1k
views
Running ASpli on R results in "Error: vector memory exhausted (limit reached?)"
aspli
rstudio
6.0 years ago
arphatak
• 0
0
votes
1
reply
915
views
Splicing analysis with ASpli
ASpli
updated 6.2 years ago by
Dario Strbenac
★ 1.5k • written 6.2 years ago by
jovel_juan
▴ 30
2
votes
2
replies
1.4k
views
ASpli ERROR during the counting step
ASpli
rnaseq
updated 6.2 years ago by
hojka.anna
▴ 10 • written 6.5 years ago by
daniele.ottaviani
▴ 10
20 results • Page
1 of 1
Recent ...
Replies
Comment: How to compare subset of samples from VCF files
by
Gordon Smyth
50k
Welcome to Bioconductor support. Did you know that you can delete your old postings if they haven't received an answer yet? Instead of ap…
Comment: How to compare subset of samples from VCF files
by
Marco
• 0
Here's the vcf file as code block ``` ##fileformat=VCFv4.2 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth"> ##FOR…
Comment: Gviz and custom database
by
James W. MacDonald
66k
The vignette for `Gviz` says you can use a `DNAStringSet`, generated using `Biostrings`. Have you tried that?
Comment: Gviz and custom database
by
luigi.faino
• 0
Dear, this is not what I need. I need to transform a fasta sequence in a genome track usable in Gviz. L
Answer: Gviz and custom database
by
James W. MacDonald
66k
https://bioconductor.org/packages/release/bioc/vignettes/txdbmaker/inst/doc/txdbmaker.html
Votes
Answer: makeExampleDESeqDataSet using pilot data
Answer: Checking/updating package versions
Answer: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)?
convert data frame of Entrez IDs to Gene Symbols
Answer: LRT, pairwise comparisons and p-value adjustment
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Gordon Smyth
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