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SGSeq
•
reset
0
votes
0
replies
99
views
how to do Differential splicing from SGSeq analysis
DEXSeq
SGSeq
22 days ago • updated 17 days ago
Sara
• 0
0
votes
1
reply
163
views
The issue with SGSeq_analyzeFeatures() returns errors on BAM files
SGSeq
updated 4 weeks ago by
kamryncole1963
• 0 • written 5 weeks ago by
Sara
• 0
0
votes
0
replies
180
views
Could SGSeq utilizes "ts" tag produced from minimap2 other than "XS" tag?
XS-tag
SplicedAlignment
SGSeq
minimap2
10 weeks ago
jk
• 0
0
votes
0
replies
270
views
SGSeq how export PSI values for each typr of splice variant
SGSeq
6 months ago
Alison
• 0
2
votes
4
replies
1.2k
views
How should I handle read counts derived from SGSeq when they were passed to limma/edgeR
SGSeq
limma
edgeR
updated 3.6 years ago by
Leonard Goldstein
▴ 220 • written 3.6 years ago by
zliu
▴ 10
0
votes
1
reply
728
views
Extract sample information from own BAM files using SGSeq
SGSeq
updated 4.4 years ago by
Leonard Goldstein
▴ 220 • written 4.4 years ago by
anjanhazra
• 0
3
votes
3
replies
895
views
Custom gene annotations for SGSeq
sgseq
alternative splicing
rna seq
updated 4.5 years ago by
Leonard Goldstein
▴ 220 • written 4.5 years ago by
116100016
• 0
0
votes
2
replies
786
views
using only uniquely-mapping reads for alternative splicing using SGSeq
rna seq
SGSeq
Alternative splicing
updated 4.6 years ago by
Leonard Goldstein
▴ 220 • written 4.6 years ago by
116100016
• 0
0
votes
0
replies
859
views
How to run my own data using SGSeq?
annotation
sgseq
updated 5.3 years ago by
shepherl
3.9k • written 5.3 years ago by
huizeng
• 0
0
votes
6
replies
1.5k
views
Which sequencing parameters are required for SGSeq analysis of splice events?
rna-seq
alternative splicing
SGSeq
5.5 years ago
andrea.bast
• 0
0
votes
1
reply
931
views
SGFeatureCounts function in SGSeq package failed to generate splice graphs
sgseq
updated 6.6 years ago by
Leonard Goldstein
▴ 220 • written 6.6 years ago by
mgdrnl
• 0
1
vote
1
reply
1.6k
views
SGSeq error on getBamInfo
SGSeq
getBamInfo
RNASeq
updated 6.6 years ago by
Leonard Goldstein
▴ 220 • written 6.6 years ago by
oolongoni
▴ 10
4
votes
5
replies
1.6k
views
R session crash with SGSeq::convertToTxFeatures
crash
SGSeq
TxDb
makeTxDbFromBiomart
TxFeatures
updated 6.6 years ago by
Leonard Goldstein
▴ 220 • written 6.7 years ago by
oolongoni
▴ 10
10
votes
10
replies
1.9k
views
SGSeq: moving toward diffex from SGSeq analysis
sgseq
rnaseq
updated 22 hours ago by
Leonard Goldstein
▴ 220 • written 6.7 years ago by
Sylvain Foisy
▴ 80
0
votes
3
replies
1.2k
views
question about subsetting SGSeq results by different categories of splice events
sgseq
updated 6.9 years ago by
Leonard Goldstein
▴ 220 • written 6.9 years ago by
amanda.joy.price
• 0
0
votes
5
replies
1.6k
views
Error when running getSGFeatureCounts
SGSeq
software error
updated 7.3 years ago by
Leonard Goldstein
▴ 220 • written 7.3 years ago by
jpromero
• 0
0
votes
15
replies
2.1k
views
Issues with SGSeq: analyzeVariants method returns an error...
sgseq
analyzevariants
updated 7.5 years ago by
Leonard Goldstein
▴ 220 • written 7.6 years ago by
Sylvain Foisy
▴ 80
1
vote
15
replies
3.3k
views
Issues with SGSeq: plotFeatures method returns NULL
sgseq
updated 7.6 years ago by
Leonard Goldstein
▴ 220 • written 7.8 years ago by
Sylvain Foisy
▴ 80
5
votes
8
replies
3.1k
views
Issues with SGSeq: analyzeFeatures() returns errors on BAM files
sgseq
updated 4.4 years ago by
anjanhazra
• 0 • written 7.8 years ago by
Sylvain Foisy
▴ 80
5
votes
16
replies
2.7k
views
Read counts generated by SGSeq are always 0
sgseq
splicing
alternative splicing
updated 8.2 years ago by
Leonard Goldstein
▴ 220 • written 8.2 years ago by
vakul.mohanty
▴ 20
2
votes
2
replies
1.6k
views
SGSeq: class of "sample_info" argument of analyzeFeatures, data.frame or DataFrame!
sgseq
updated 8.2 years ago by
Leonard Goldstein
▴ 220 • written 8.2 years ago by
Chao-Jen Wong
▴ 40
1
vote
6
replies
1.9k
views
Error when predicting features with SGSeq
SGSeq
updated 8.8 years ago by
Leonard Goldstein
▴ 80 • written 8.8 years ago by
Helen Zhou
▴ 150
1
vote
6
replies
2.2k
views
SGSeq error on analyzeFeatures
SGSeq
analyzeFeatures
Splicing
9.4 years ago
Paolo Guarnieri
▴ 20
23 results • Page
1 of 1
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Daniele
• 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
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BioinfGuru
▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
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Thanks a lot!
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Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
by
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▴ 360
So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!
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Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
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