Showing : SGSeq • reset
10
votes
11
replies
2.5k
views
SGSeq: moving toward diffex from SGSeq analysis
sgseq rnaseq
updated 9 months ago by • 0 • written 7.5 years ago by ▴ 80
0
votes
0
replies
329
views
how to do Differential splicing from SGSeq analysis
DEXSeq SGSeq
10 months ago Sara • 0
1
vote
1
reply
453
views
The issue with SGSeq_analyzeFeatures() returns errors on BAM files
SGSeq
updated 10 months ago by • 0 • written 10 months ago by • 0
1
vote
0
replies
556
views
Could SGSeq utilizes "ts" tag produced from minimap2 other than "XS" tag?
XS-tag SplicedAlignment SGSeq minimap2
12 months ago jk ▴ 10
0
votes
0
replies
481
views
SGSeq how export PSI values for each typr of splice variant
SGSeq
16 months ago Alison • 0
2
votes
5
replies
1.6k
views
How should I handle read counts derived from SGSeq when they were passed to limma/edgeR
SGSeq limma edgeR
updated 5 months ago by • 0 • written 4.4 years ago by ▴ 10
6
votes
8
replies
3.6k
views
Issues with SGSeq: analyzeFeatures() returns errors on BAM files
sgseq
updated 5.2 years ago by ▴ 10 • written 8.6 years ago by ▴ 80
2
votes
1
reply
1.0k
views
Extract sample information from own BAM files using SGSeq
SGSeq
updated 5.2 years ago by ▴ 260 • written 5.2 years ago by ▴ 10
4
votes
4
replies
1.2k
views
Custom gene annotations for SGSeq
sgseq alternative splicing rna seq
updated 7 months ago by • 0 • written 5.3 years ago by • 0
0
votes
2
replies
1.1k
views
using only uniquely-mapping reads for alternative splicing using SGSeq
rna seq SGSeq Alternative splicing
updated 5.4 years ago by ▴ 260 • written 5.4 years ago by • 0
0
votes
0
replies
1.0k
views
How to run my own data using SGSeq?
annotation sgseq
updated 6.1 years ago by 4.1k • written 6.1 years ago by • 0
0
votes
6
replies
1.8k
views
Which sequencing parameters are required for SGSeq analysis of splice events?
rna-seq alternative splicing SGSeq
6.3 years ago andrea.bast • 0
0
votes
1
reply
1.2k
views
SGFeatureCounts function in SGSeq package failed to generate splice graphs
sgseq
updated 7.4 years ago by ▴ 260 • written 7.4 years ago by • 0
2
votes
1
reply
1.9k
views
SGSeq error on getBamInfo
SGSeq getBamInfo RNASeq
updated 7.4 years ago by ▴ 260 • written 7.4 years ago by ▴ 40
4
votes
5
replies
1.9k
views
R session crash with SGSeq::convertToTxFeatures
crash SGSeq TxDb makeTxDbFromBiomart TxFeatures
updated 7.4 years ago by ▴ 260 • written 7.4 years ago by ▴ 40
3
votes
3
replies
1.8k
views
question about subsetting SGSeq results by different categories of splice events
sgseq
updated 7.7 years ago by ▴ 260 • written 7.7 years ago by ▴ 10
1
vote
5
replies
1.9k
views
Error when running getSGFeatureCounts
SGSeq software error
updated 8.1 years ago by ▴ 260 • written 8.1 years ago by ▴ 10
0
votes
15
replies
2.6k
views
Issues with SGSeq: analyzeVariants method returns an error...
sgseq analyzevariants
updated 8.2 years ago by ▴ 260 • written 8.4 years ago by ▴ 80
1
vote
15
replies
3.9k
views
Issues with SGSeq: plotFeatures method returns NULL
sgseq
updated 8.4 years ago by ▴ 260 • written 8.6 years ago by ▴ 80
5
votes
16
replies
3.1k
views
Read counts generated by SGSeq are always 0
sgseq splicing alternative splicing
updated 9.0 years ago by ▴ 260 • written 9.0 years ago by ▴ 20
2
votes
2
replies
1.8k
views
SGSeq: class of "sample_info" argument of analyzeFeatures, data.frame or DataFrame!
sgseq
updated 9.0 years ago by ▴ 260 • written 9.0 years ago by ▴ 40
1
vote
6
replies
2.2k
views
Error when predicting features with SGSeq
SGSeq
updated 9.6 years ago by ▴ 90 • written 9.6 years ago by ▴ 150
1
vote
6
replies
2.5k
views
SGSeq error on analyzeFeatures
SGSeq analyzeFeatures Splicing
10.2 years ago Paolo Guarnieri ▴ 20
23 results • Page 1 of 1
Recent ...
Replies
Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k
No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…
Answer: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k
I strongly recommend to not concern yourself with these sorts of marginal problems because you're entering a realm in which you're entirely…
Comment: Problem using locateVariants() from the VariantAnnotation package by Marco • 0
Ok, I think I found the problem. By looking at the `locateVariants()` source code, I was able to pinpoint that the problems is when trying …
Comment: Conumee for EPIC and EPICv2 copy number by Adam • 0
As described on the [github](https://github.com/hovestadtlab/conumee2) the way to do this is using array_type = c("EPIC", "EPICv2") This i…
Comment: graper 1.22 Build is Broken by shepherl 4.1k
This is not an appropriate place to report this. this is for usage questions. maintainers are notified automatically when it is failing on …
Votes
A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
Answer: Vertical line at A=0, nothing else, on MA plot
Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
Answer: Group-specific condition effects with individuals nested: matrix is not full ra
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