Bioconductor Rstudio

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DESeq2 RSTUDIO PCAtools

updated 11 months ago by swbarnes2 ★ 1.4k • written 11 months ago by Aaliya • 0

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520

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RStudio ggkegg

updated 15 months ago by James W. MacDonald 68k • written 15 months ago by Ramirj49 • 0

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869

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Rstudio cDNA ensembldb NCBI

16 months ago R_Page • 0

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Rstudio plotPCA DESeq2

16 months ago yee • 0

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AccNo OrgDb convert Organismname RStudio

updated 16 months ago by James W. MacDonald 68k • written 17 months ago by j_denton • 0

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RStudio convert ensembldb NCBI

updated 6 months ago by MauriAndres • 0 • written 17 months ago by j_denton • 0

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error RStudio ggplot2 DESeq2

updated 17 months ago by James W. MacDonald 68k • written 17 months ago by BioES • 0

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667

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Rstudio scRNAseq DESeq2

updated 20 months ago by ATpoint ★ 4.8k • written 20 months ago by DrFizz • 0

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scRNAseq RStudio DESeq2

updated 20 months ago by ATpoint ★ 4.8k • written 20 months ago by DrFizz • 0

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RStudio R M1 BiocParallel Mac

updated 2.2 years ago by Christian Mertes • 0 • written 2.4 years ago by me.achleitner • 0

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RStudio MOFA2 bug knitr

updated 2.4 years ago by James W. MacDonald 68k • written 2.4 years ago by Kevin Coombes ▴ 430

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RStudio flowFDA

updated 2.5 years ago by Basti ▴ 780 • written 2.5 years ago by kinoshamoodley • 0

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DESeq2 RStudio GenomeInfoDbData hadnon-zeroexitstatus

updated 2.5 years ago by wshao9 • 0 • written 2.7 years ago by JoseR • 0

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RStudio PCA DESeq2

written 2.9 years ago by 960942 • 0

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rstudio maftools

3.0 years ago misslubblys • 0

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Ensembl Rstudio ensembldb AnnotationHub ensdb

updated 8 months ago by shepherl 4.1k • written 3.2 years ago by jon.klonowski ▴ 40

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R Rstudio Bioconducter statistics

updated 3.1 years ago by Sean Davis 21k • written 3.2 years ago by Jitendra ▴ 10

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TFBSTools FASTA RStudio

3.4 years ago HELEN • 0

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TFBSTools DNASeqData readFASTA DNA RStudio

updated 3.4 years ago by James W. MacDonald 68k • written 3.4 years ago by HELEN • 0

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TFBSTools RStudio R

3.5 years ago HELEN • 0

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DESeq2 RStudio

3.5 years ago Sonia • 0

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2.8k

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rstudio

updated 3.6 years ago by James W. MacDonald 68k • written 3.6 years ago by Fiona • 0

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DNASeq rstudio fasta Biostrings csv

3.6 years ago HELEN • 0

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16k

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Rstudio Seurat

updated 3.9 years ago by Kevin Blighe ★ 4.0k • written 3.9 years ago by KOUSTAV • 0

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dendrogram hclust textanalysis R RStudio

4.0 years ago Abby ▴ 10

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DefiningGroups RStudio DECIPHER Specificprimers

updated 4.1 years ago by Erik Wright ▴ 150 • written 4.1 years ago by noeliaruizalonso23 • 0

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import.bw rtracklayer http RStudio

updated 4.3 years ago by Michael Lawrence ★ 11k • written 4.3 years ago by Søren • 0

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AnnotationHub Shiny Rstudio

updated 5.1 years ago by shepherl 4.1k • written 5.1 years ago by bwiley4 • 0

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R Rstudio Error readTranscriptFeatures genomation

updated 5.4 years ago by altuna akalin ▴ 20 • written 5.4 years ago by hwaterma • 0

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bioconductor proxy macOS R RStudio

updated 5.4 years ago by Martin Morgan 25k • written 5.5 years ago by mcall ▴ 20

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RStudio AWS AMI

5.7 years ago bio-explorer • 0

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ChIPQC Rstudio

updated 5.7 years ago by Martin Morgan 25k • written 5.7 years ago by Nitesh Kumar Singh ▴ 30

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deseq2 null summarizedexperiment rstudio

updated 5.8 years ago by Martin Morgan 25k • written 5.8 years ago by 200dumplings • 0

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software error ballgown rstudio R stattest

6.0 years ago fatimarasool135 • 0

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R maketxdbfrombiomart maketxdbfromgranges rstudio ensembl

updated 23 months ago by Shreyash ▴ 10 • written 6.3 years ago by rtwest • 0

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deseq2 rstudio install error

updated 6.5 years ago by Michael Love 43k • written 6.5 years ago by jyoung • 0

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rstudio heatmap.2

updated 6.6 years ago by James W. MacDonald 68k • written 6.6 years ago by austin.taylor • 0

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R rstudio package installation

updated 6.6 years ago by Martin Morgan 25k • written 6.6 years ago by ariel ▴ 20

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deseq2 R ubuntu bioconductor rstudio

updated 6.7 years ago by Michael Love 43k • written 6.7 years ago by drumarsohail • 0

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aspli rstudio

6.8 years ago arphatak • 0

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biomart rstudio ensembl mart

updated 7.1 years ago by Mike Smith ★ 6.6k • written 7.1 years ago by mullpaul • 0

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1.6k

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affycoretools Rstudio fatal error

updated 7.1 years ago by James W. MacDonald 68k • written 7.1 years ago by biostR ▴ 10

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package development bioconductor rstudio rmarkdown vignettes

7.4 years ago clarisbaby • 0

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1.6k

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oligo package Rstudio fatal error microarray CEL

7.4 years ago biostR ▴ 10

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1.9k

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complexheatmap Rstudio NOISeq

7.6 years ago Luiz • 0

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2.2k

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bioconductor rstudio

updated 7.7 years ago by Martin Morgan 25k • written 7.7 years ago by yog312 • 0

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rstudio r plotMA

7.8 years ago g.k • 0

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Rstudio cummerbund error

7.8 years ago mszskb • 0

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1.7k

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rstudio flowclust

updated 7.8 years ago by shepherl 4.1k • written 7.8 years ago by shadhiksk • 0

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bioconductor flow cytometry rstudio

updated 7.8 years ago by SamGG ▴ 360 • written 7.8 years ago by shadhiksk • 0

50 results • Page 1 of 1

Recent ...

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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

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Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

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