Showing : Error • reset
0
votes
7
replies
1.7k
views
Graphics API Version Mismatch Error with DESeq2 and ggplot2 in RStudio on Ubuntu 22.04
error RStudio ggplot2 DESeq2
updated 6 months ago by 65k • written 6 months ago by • 0
10
votes
10
replies
7.3k
views
biomaRt not working - lazy table error
error lazy R biomaRt table
updated 8 weeks ago by • 0 • written 6 months ago by ▴ 10
0
votes
0
replies
297
views
proActiv - Error in estimateSizeFactorsForMatrix when using the proActiv function
proActiv error estimateSizeFactorsForMatrix
6 months ago Chris • 0
0
votes
1
reply
430
views
Problems when running GDC_prepare in R
TCGAbiolinks error GDC_prepare
6 months ago leon • 0
0
votes
3
replies
666
views
DiffBind issue with edgeR$bTagwise and DESeq2$fitType
Config DiffBind Error
updated 9 months ago by ★ 5.2k • written 9 months ago by • 0
0
votes
17
replies
3.5k
views
What causes this DESeq2 error at "fitting model and testing"?
deseq2 differential expression error
updated 11 months ago by • 0 • written 6.6 years ago by • 0
0
votes
1
reply
487
views
Calculate RPKMs and Output proteins pass the cutoff into FASTA file ... Error in keepSeqlevels(anno, seqlevels(galn), pruning.mode = "coarse") : i…
customProDB easyrun error mm10 Mus_musculus_Data
updated 12 months ago by 65k • written 12 months ago by • 0
0
votes
0
replies
495
views
Are LFQ workflow arguments from DEP package all required or optional?
LFQ R DEP error
13 months ago aymanreffai • 0
0
votes
8
replies
1.2k
views
fail to annotate chromosome data to single cell object
error SingleCell annotate
updated 6 months ago by • 0 • written 14 months ago by • 0
0
votes
2
replies
563
views
Error message trying to open downloaded package
error DEP
15 months ago kcpaul168 • 0
0
votes
0
replies
578
views
DEqMS function "outputResult" reports wrong sca.adj.pval
outputresult DEqMS sca.adj.pval error p-value
19 months ago Bastian • 0
0
votes
3
replies
991
views
tximport error
error tximport
updated 20 months ago by 42k • written 20 months ago by • 0
0
votes
3
replies
2.2k
views
[ExpressionSet] Question: Error in validObject(.Object)
ExpressionSet Assay NanoString Error Data
updated 22 months ago by 65k • written 22 months ago by • 0
0
votes
7
replies
1.4k
views
Centos 7.8, custom-compiled R-4.1: iPath_1.0.0 won't install
error iPath R compilation
2.4 years ago • updated 2.3 years ago wjb2130 • 0
0
votes
2
replies
841
views
Error in TFBSTools at SitesetList
error TFBSTools R
2.6 years ago • updated 2.5 years ago HELEN • 0
4
votes
9
replies
3.7k
views
biomaRt - getBM; Error with obtaining a dataset from getBM() function
biomaRt error getBM
updated 3.0 years ago by ★ 6.5k • written 3.2 years ago by ▴ 20
0
votes
3
replies
896
views
bioconductor.org not reachable from EU region
error http429 server
3.1 years ago ashu.upadhyay2206 • 0
0
votes
2
replies
1.3k
views
Finding the correct version of DESeq2 for my version of R (3.6.1)
error DESeq2 Install
updated 3.2 years ago by 65k • written 3.2 years ago by • 0
1
vote
2
replies
2.9k
views
error in DESeq2 results(dds)
DESeq2 datasetfrommatrix results error
3.2 years ago james • 0
3
votes
4
replies
2.9k
views
R Error: package ‘GenomeInfoDb’ could not be loaded on MacBook
error mac DESeq2 GenomeInfoDb R
3.4 years ago • updated 3.3 years ago Dan ▴ 20
1
vote
1
reply
970
views
Errors in installing RforProteomics package
error RforProteomics Install
updated 3.5 years ago by ★ 6.5k • written 3.5 years ago by • 0
0
votes
1
reply
734
views
testClusters and trimClusters error in BiSeq
BiSeq testClusters error dmr
3.9 years ago akhaira • 0
6
votes
6
replies
1.2k
views
Suggestion for next revision of edgeR User Guide re Design matrix setup
edger error
updated 4.0 years ago by 50k • written 4.0 years ago by • 0
0
votes
14
replies
2.3k
views
annFUN error TOPGO
TOPGO annFUN error
updated 4.1 years ago by ★ 3.9k • written 4.1 years ago by • 0
0
votes
0
replies
597
views
Error on FindOptimalBinning function
bhc error
4.2 years ago pavel.granalacant • 0
0
votes
0
replies
863
views
Multicollinearity and pR2Y =0.1
opls-da error multicollinearity
4.3 years ago adriana.roca-fernandez • 0
0
votes
1
reply
1.0k
views
boxplot Error in Bioconductor
boxplot bioconductor R error
4.4 years ago l154359 • 0
0
votes
4
replies
973
views
nucleR ERROR unable to find an inherited method for function peakDetection for signature
nucleosome peaks error Job
updated 4.4 years ago by 65k • written 4.4 years ago by • 0
0
votes
5
replies
1.5k
views
readTranscriptFeatures from genomation
R Rstudio Error readTranscriptFeatures genomation
updated 4.5 years ago by ▴ 20 • written 4.5 years ago by • 0
0
votes
3
replies
809
views
Error in E-Eb Limma package
limma error E-Eb
updated 4.6 years ago by 50k • written 4.6 years ago by • 0
4
votes
7
replies
1.3k
views
bam files to hilbert curve
HilbertCurve error bamfiles GRobject
4.6 years ago adklts • 0
0
votes
6
replies
8.0k
views
Rhtslib - install error
Rhtslib installation error zlib
updated 4.6 years ago by • 0 • written 5.6 years ago by • 0
0
votes
1
reply
1.3k
views
DiffBind dba error
DiffBind dba R error
updated 4.7 years ago by ★ 5.2k • written 4.9 years ago by • 0
0
votes
1
reply
1.2k
views
Help with installation of readat package
readat error
updated 4.8 years ago by 3.9k • written 4.8 years ago by • 0
2
votes
2
replies
1.5k
views
TCGAbiolinks GDCprepare error
TCGAbiolinks GDCprepare error
updated 4.9 years ago by ▴ 270 • written 4.9 years ago by ▴ 10
0
votes
1
reply
1.8k
views
R: oligo packages install error
oligo packages error
updated 4.9 years ago by 25k • written 4.9 years ago by • 0
0
votes
0
replies
849
views
Error in parseGenBank
genbankr parseGenBank gbk error
4.9 years ago ashley.dederich • 0
2
votes
3
replies
1.0k
views
How can I overcome the error of "No residual degrees of freedom in linear model fits"?
limma microarray error
updated 4.9 years ago by ★ 1.5k • written 4.9 years ago by ▴ 80
0
votes
6
replies
4.2k
views
Error in getOneSeqFromBSgenomeMultipleSequences During singeR tutorial
error
4.9 years ago dfcarril • 0
0
votes
4
replies
1.9k
views
DESeq2 compare all_vs_all levels error
deseq2 error RNAseq
updated 4.9 years ago by ★ 1.4k • written 4.9 years ago by ▴ 30
0
votes
3
replies
974
views
Error in if (all(x <= minReadCount) & lambda <= minReadCount) { : missing value where TRUE/FALSE needed
cnmops cn.mops error
updated 4.9 years ago by 25k • written 4.9 years ago by • 0
0
votes
6
replies
1.9k
views
atacseqQC error while splittin the bamfile
ATACseqQC ATAC-seq error split bam file
updated 5.0 years ago by • 0 • written 5.0 years ago by ▴ 10
0
votes
8
replies
2.5k
views
tximport command error
tx2gene txi error
updated 5.0 years ago by 65k • written 5.0 years ago by • 0
2
votes
6
replies
1.5k
views
EdgeR glmTreat error
edger error
updated 5.1 years ago by 65k • written 5.1 years ago by • 0
1
vote
1
reply
1.0k
views
The query to the BioMart webservice returned an invalid result: biomaRt expected a character string of length 1
biomaRt error
updated 5.1 years ago by 65k • written 5.1 years ago by ▴ 10
0
votes
1
reply
807
views
Error in intramodularConnectivity(ADJ1, colorh1) : object 'colorh1' not found
error wgcna affymetrix data
updated 5.1 years ago by ★ 3.0k • written 5.1 years ago by • 0
2
votes
6
replies
1.9k
views
featurecounts Rsubread ERROR on exon_id
R error software error Rsubread featurecounts
updated 5.1 years ago by ★ 3.6k • written 5.1 years ago by • 0
2
votes
3
replies
3.2k
views
DESeq2- preliminary study no replicates
deseq2 replicates error DESeqDataSetFromMatrix
updated 5.1 years ago by 42k • written 5.1 years ago by • 0
1
vote
1
reply
1.1k
views
Error in getBM(c("affy_rice", "ensembl_gene_id", "entrezgene", "external_gene_name"), : could not find function "featureNames"
annotation error biomaRT affy ricedataset
updated 5.1 years ago by ★ 6.5k • written 5.1 years ago by • 0
1
vote
2
replies
2.1k
views
Errors installing mzR package
proteomics error
updated 5.2 years ago by 1.6k • written 5.2 years ago by • 0
50 results • Page 1 of 1
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Comment: Ensembl plants at annotationHub? by Daniele • 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0
Thanks a lot!
Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150
Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by Matthew Thornton ▴ 360
So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!
Votes
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
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