Showing : RStudio • reset
0
votes
7
replies
1.1k
views
DESeq2 output used for PCA plot on R studio
DESeq2 RSTUDIO PCAtools
updated 6 months ago by ★ 1.4k • written 6 months ago by • 0
0
votes
0
replies
425
views
RN to EC Mapping Not Working for Some Nodes
RStudio ggkegg
updated 10 months ago by 67k • written 10 months ago by • 0
2
votes
3
replies
723
views
NCBI protein to NCBI cDNA (Ensembl conversions would be great as well) in R
Rstudio cDNA ensembldb NCBI
11 months ago R_Page • 0
0
votes
2
replies
753
views
Help Subsetting DDS for plotPCA for contrast groups
Rstudio plotPCA DESeq2
11 months ago yee • 0
1
vote
3
replies
678
views
Pan-organism OrgDb database, Accession number translated to organism name in R
AccNo OrgDb convert Organismname RStudio
updated 11 months ago by 67k • written 12 months ago by • 0
4
votes
6
replies
1.6k
views
Conversion between different types of bioinformatic forms. (eg. NCBI protein to Ensembl protein) in R
RStudio convert ensembldb NCBI
updated 5 weeks ago by • 0 • written 12 months ago by • 0
0
votes
7
replies
2.6k
views
Graphics API Version Mismatch Error with DESeq2 and ggplot2 in RStudio on Ubuntu 22.04
error RStudio ggplot2 DESeq2
updated 12 months ago by 67k • written 12 months ago by • 0
0
votes
1
reply
581
views
FALSE error when checking a pre made sample data
Rstudio scRNAseq DESeq2
updated 15 months ago by ★ 4.5k • written 15 months ago by • 0
0
votes
1
reply
1.6k
views
DESeq2 error after installing BiocManager
scRNAseq RStudio DESeq2
updated 15 months ago by ★ 4.5k • written 15 months ago by • 0
0
votes
2
replies
1.4k
views
Usinig BiocParallel package in R with M1 MAC
RStudio R M1 BiocParallel Mac
updated 22 months ago by • 0 • written 24 months ago by • 0
0
votes
1
reply
1.0k
views
Bug: MOFA2 sets an environment variable that breaks knit in RStudio
RStudio MOFA2 bug knitr
updated 2.0 years ago by 67k • written 2.0 years ago by ▴ 430
0
votes
1
reply
975
views
Issue with installation of a package.
RStudio flowFDA
updated 2.1 years ago by ▴ 780 • written 2.1 years ago by • 0
0
votes
14
replies
4.9k
views
GenomeInfoDbData had non-zero exit status
DESeq2 RStudio GenomeInfoDbData hadnon-zeroexitstatus
updated 2.1 years ago by • 0 • written 2.3 years ago by • 0
4
votes
5
replies
2.7k
views
DESeq2::plotPCA plotting error
RStudio PCA DESeq2
written 2.5 years ago by • 0
0
votes
0
replies
1.4k
views
function GDCquery_Maf error
rstudio maftools
2.6 years ago misslubblys • 0
9
votes
14
replies
7.4k
views
Where can I find EnsDb.Hsapiens.v105?
Ensembl Rstudio ensembldb AnnotationHub ensdb
updated 3 months ago by 4.1k • written 2.8 years ago by ▴ 40
0
votes
3
replies
1.8k
views
Reading large file (15GB) in R
R Rstudio Bioconducter statistics
updated 2.7 years ago by 21k • written 2.8 years ago by ▴ 10
0
votes
0
replies
755
views
Read the first sequence from fasta file - TFBSTool
TFBSTools FASTA RStudio
3.0 years ago HELEN • 0
0
votes
1
reply
957
views
TFBSTools and readFASTA
TFBSTools DNASeqData readFASTA DNA RStudio
updated 3.0 years ago by 67k • written 3.0 years ago by • 0
0
votes
0
replies
740
views
TFBSTools- analysis for trascriprion factors
TFBSTools RStudio R
3.1 years ago HELEN • 0
1
vote
5
replies
2.6k
views
DESeq2: All samples have 0 counts for all genes. check the counting script
DESeq2 RStudio
3.1 years ago Sonia • 0
0
votes
1
reply
2.5k
views
Unable to Install packages in R
rstudio
updated 3.1 years ago by 67k • written 3.1 years ago by • 0
0
votes
4
replies
3.6k
views
transformation of csv file to fasta format with biostrings and r studio
DNASeq rstudio fasta Biostrings csv
3.2 years ago HELEN • 0
5
votes
15
replies
14k
views
Can't able to install Seurat in Rstudio
Rstudio Seurat
updated 3.4 years ago by ★ 4.0k • written 3.4 years ago by • 0
1
vote
7
replies
3.6k
views
Error with hclust
dendrogram hclust textanalysis R RStudio
3.6 years ago • updated 3.5 years ago Abby ▴ 10
0
votes
1
reply
1.0k
views
Defining groups in Decipher by sequence position in the database (FASTA)
DefiningGroups RStudio DECIPHER Specificprimers
updated 3.7 years ago by ▴ 150 • written 3.7 years ago by • 0
1
vote
5
replies
5.0k
views
RStudio vs R: using rtracklayer to import bigwig files from http works in R but not in RStudio.
import.bw rtracklayer http RStudio
updated 3.9 years ago by ★ 11k • written 3.9 years ago by • 0
0
votes
1
reply
1.1k
views
AnnotationHub display() gives JavaScript Alert and DataTables warning
AnnotationHub Shiny Rstudio
updated 4.7 years ago by 4.1k • written 4.7 years ago by • 0
0
votes
5
replies
1.9k
views
readTranscriptFeatures from genomation
R Rstudio Error readTranscriptFeatures genomation
updated 5.0 years ago by ▴ 20 • written 5.0 years ago by • 0
2
votes
1
reply
9.5k
views
Error: status was 'SSL connect error'
bioconductor proxy macOS R RStudio
updated 5.0 years ago by 25k • written 5.0 years ago by ▴ 20
0
votes
5
replies
1.9k
views
Using RStudio AMI with localhost
RStudio AWS AMI
5.3 years ago bio-explorer • 0
3
votes
6
replies
2.0k
views
Integer overflow issue with ChIPQC
ChIPQC Rstudio
updated 5.3 years ago by 25k • written 5.3 years ago by ▴ 30
1
vote
8
replies
3.0k
views
DESeq2/SummarizedExperiment RStudio shows Object With Null Pointer
deseq2 null summarizedexperiment rstudio
updated 5.4 years ago by 25k • written 5.4 years ago by • 0
0
votes
0
replies
2.0k
views
Error in contrasts<-(tmp, value = contr.funs[1 + isOF[nn]]) : contrasts can be applied only to factors with 2 or more levels
software error ballgown rstudio R stattest
5.6 years ago fatimarasool135 • 0
2
votes
4
replies
2.0k
views
make TxDb from list of genes
R maketxdbfrombiomart maketxdbfromgranges rstudio ensembl
updated 18 months ago by ▴ 10 • written 5.9 years ago by • 0
0
votes
4
replies
1.8k
views
New computer won't install DESeq2
deseq2 rstudio install error
updated 6.1 years ago by 42k • written 6.1 years ago by • 0
2
votes
2
replies
4.2k
views
ColSideColors set by rows for heatmap.2 in RStudio
rstudio heatmap.2
updated 6.2 years ago by 67k • written 6.2 years ago by • 0
0
votes
1
reply
1.5k
views
Install Bioconductor package locally/temporarily
R rstudio package installation
updated 6.2 years ago by 25k • written 6.2 years ago by ▴ 20
0
votes
1
reply
2.0k
views
DeSeq2 installation on ubuntu fails
deseq2 R ubuntu bioconductor rstudio
updated 6.3 years ago by 42k • written 6.3 years ago by • 0
0
votes
0
replies
1.2k
views
Running ASpli on R results in "Error: vector memory exhausted (limit reached?)"
aspli rstudio
6.4 years ago arphatak • 0
1
vote
4
replies
1.8k
views
biomaRt scan error for latest assembly when indicating version Number
biomart rstudio ensembl mart
updated 6.7 years ago by ★ 6.6k • written 6.7 years ago by • 0
2
votes
4
replies
1.4k
views
R session terminates when trying to load affycoretools package
affycoretools Rstudio fatal error
updated 6.7 years ago by 67k • written 6.7 years ago by ▴ 10
0
votes
2
replies
3.9k
views
Error in file.choose() : file choice cancelled
package development bioconductor rstudio rmarkdown vignettes
7.0 years ago clarisbaby • 0
1
vote
2
replies
1.5k
views
Rstudio session aborts when using read.celfiles()
oligo package Rstudio fatal error microarray CEL
7.0 years ago biostR ▴ 10
0
votes
0
replies
1.8k
views
Problem with heatmap by ComplexHeatmap
complexheatmap Rstudio NOISeq
7.1 years ago Luiz • 0
0
votes
1
reply
2.1k
views
Trouble installing Bioconductor in R-studio (R version 3.3.1)
bioconductor rstudio
updated 7.3 years ago by 25k • written 7.3 years ago by • 0
1
vote
1
reply
5.1k
views
MA plot in R
rstudio r plotMA
7.4 years ago g.k • 0
0
votes
3
replies
2.8k
views
error installing cummeRbund in R studio (Windows desktop)
Rstudio cummerbund error
7.4 years ago mszskb • 0
0
votes
4
replies
1.6k
views
problem in installing flowclust
rstudio flowclust
updated 7.4 years ago by 4.1k • written 7.4 years ago by • 0
0
votes
1
reply
1.3k
views
can a function outliers be applied for a flowframe?
bioconductor flow cytometry rstudio
updated 7.4 years ago by ▴ 350 • written 7.4 years ago by • 0
50 results • Page 1 of 1
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Comment: Consistent Decimals In Data After Antibody Array Background Correction Using Lim by Ai • 0
Hi Gordon, Thank you so much for answering my question and confirming that this is expected! I will go ahead note this down. Sincerely, …
Answer: Annotation for EPICv2 by icecreamlover • 0
Hello, I am also working on analyzing my data from EPICv2 using ChAMP. I used this resource as a guide: https://github.com/YuanTian1991/ChA…
Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k
And it doesn't matter if you're doing gene set analyses after, if the statistics are questionable to begin with.
Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k
If you're saying that (as an example) you have treated and control in both assay types, and you want to combine and make comparisons betwee…
Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Guido Hooiveld ★ 4.1k
I have contacted NCBI, and meanwhile got an an answer. See below. It turns out that the official, HGNC-approved symbols are present in the…
Votes
Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim
A: How does edgeR cpm function calculate log(CPM) values?
Answer: DecideTest vs topTAGs in edgeR
Comment: DESeq Input from Salmon + tximport/tximeta
Comment: DESeq Input from Salmon + tximport/tximeta
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