Showing : DNAcopy • reset
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DNAcopy segment function not reproducible even when setting seed
DNAcopy
11 months ago BID • 0
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0
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889
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NAs in tabular output from DNAcopy
Bioconductor DNAcopy
17 months ago NewtoBioconductor • 0
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0
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650
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do DNAcopy do copy number segmentation need separate between tumor samples and mormal samples
DNAcopy
3.2 years ago xingyu • 0
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1
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2.6k
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BiocManager::install("DNAcopy") failed to install in r
DNAcopy R
updated 3.4 years ago by ★ 6.6k • written 3.4 years ago by • 0
0
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11
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1.9k
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Create `Copy Number Array' Data Object error
DNAcopy
4.2 years ago El • 0
0
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3
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2.0k
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"genomdat must be numeric"error in DNAcopy Package (Solved)
DNAcopy Varscan
updated 4.2 years ago by • 0 • written 7.0 years ago by • 0
0
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0
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777
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don't get an output of wigtoRangedData's function HMMcopy Package for detect CNV
HMMcopy DNAcopy
4.3 years ago El • 0
2
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3
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1.8k
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Doubt about WL in cn.mops
dnacopy dnaseq genomic cn.mops cnv
updated 6.6 years ago by ▴ 540 • written 6.6 years ago by • 0
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1
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2.9k
views
change plot title in DNAcopy multiple plot.type="s"
DNAcopy
updated 7.3 years ago by ▴ 690 • written 7.3 years ago by ▴ 60
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0
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971
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plot multiple chromosomes from plot.type="c" to PDF files automatically in RStudio (RMD document)
dnacopy
7.3 years ago Stephane Plaisance | VIB | ▴ 60
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3
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1.7k
views
wrong output of DNAcopy::segment() for chr. with empty copy number data
DNAcopy dnacopy
7.5 years ago Alexandre Kuhn ▴ 20
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3
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1.9k
views
Analysing TCGA Level 3 Copy Number Data Location of markers in the genome
TCGA Cancer dnacopy segmentation
updated 7.6 years ago by ▴ 130 • written 7.6 years ago by • 0
1
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2
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1.6k
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DNAcopy segmentation issue: min.width argument not working?
dnacopy segmentation CBS
updated 8.0 years ago by ▴ 30 • written 8.0 years ago by ▴ 10
2
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4
replies
2.7k
views
Visualizing CopywriteR's segmentation output in IGV
copywriter dnacopy
updated 9.0 years ago by ▴ 170 • written 9.0 years ago by • 0
0
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2
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1.3k
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could not find function "DNAcopy"
dnacopy
updated 9.0 years ago by 25k • written 9.0 years ago by • 0
0
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1
reply
1.7k
views
CNAnorm ploidy help
CNAnorm DNAcopy
updated 9.2 years ago by • 0 • written 9.2 years ago by ▴ 40
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0
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1.1k
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Get data frame of CNV calls from Seglist object
seglist snapcgh dnacopy
9.5 years ago Cian Murphy ▴ 40
0
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1
reply
1.5k
views
"genomdat must be numeric" error form DNACopy package
software error dnacopy crlmm
updated 9.7 years ago by 68k • written 9.7 years ago by • 0
0
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0
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1.6k
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DNAcopy default settings and SNP6.0 arrays
SNP DNAcopy SNP6.0 CNV
10.1 years ago giovanni.dario • 0
1
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1
reply
1.4k
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Installation of DNAcopy was absolutly done in R2.15?
installation dnacopy
10.2 years ago vov-x • 0
0
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4
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2.1k
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DNACopy Question what is passed to the maploc argument.
DNAcopy DNAcopy
updated 10.6 years ago by ★ 6.8k • written 10.6 years ago by ▴ 30
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0
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1.2k
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DNA Copy CNA function , what do you pass to maploc argument?
DNAcopy DNAcopy
10.6 years ago Nikolas Balanis ▴ 30
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3
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4.0k
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Error installing impute package
GUI impute DNAcopy GUI impute DNAcopy
updated 10.7 years ago by ★ 8.2k • written 10.7 years ago by ▴ 80
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0
replies
1.4k
views
CGHCall problems
aCGH probe DNAcopy aCGH CGHcall aCGH probe DNAcopy aCGH CGHcall
11.5 years ago Guest User ★ 13k
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0
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1.4k
views
readPositionalInfo in snapCGH for preparing CNA files for DNAcopy
aCGH DNAcopy aCGH snapCGH aCGH DNAcopy aCGH snapCGH
11.6 years ago Guest User ★ 13k
0
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1
reply
1.9k
views
Error in sort(abs(diff(genomdat)))[1:n.keep]
DNAcopy DNAcopy
updated 11.8 years ago by ▴ 40 • written 11.8 years ago by ★ 13k
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3
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1.6k
views
Error installing (some) Bioconductor packages on Mac OSX under R-3.0.0?
GUI impute DNAcopy GUI impute DNAcopy
updated 11.9 years ago by ★ 8.2k • written 11.9 years ago by ★ 3.0k
0
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1
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1.6k
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Can we use DNAcopy to analyse Copy Number Viaration using next generation sequencing data generated by eigher Ion PGM or Illumina MiSeq
Sequencing DNAcopy Sequencing DNAcopy
updated 12.1 years ago by ▴ 210 • written 12.1 years ago by ★ 13k
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5
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2.0k
views
bioconductor on EMR / mapreduce
DNAcopy DNAcopy
updated 12.4 years ago by ★ 8.2k • written 12.4 years ago by ▴ 70
0
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1
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1.7k
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DNAcopy for CNV in SNP Affy 6.0
SNP affy DNAcopy SNP affy DNAcopy
12.9 years ago Ekta Jain ▴ 370
0
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1
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1.4k
views
DNAcopy for CNV in SNP Affy 6.0
DNAcopy DNAcopy
updated 12.9 years ago by 6.7k • written 12.9 years ago by ▴ 370
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0
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1.2k
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aCGH segmentation with DNAcopy
aCGH probe DNAcopy aCGH aCGH probe DNAcopy aCGH
13.0 years ago Emilie Lalonde ▴ 10
0
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1
reply
1.5k
views
CNTools error message
CGH probe DNAcopy CGH probe DNAcopy
updated 13.1 years ago by 25k • written 13.1 years ago by ▴ 280
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2
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1.3k
views
questions on cghMCR package
DNAcopy cghMCR DNAcopy cghMCR
updated 13.1 years ago by 25k • written 13.1 years ago by ▴ 280
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0
replies
1.2k
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Fwd: seeking help on cghMCR pleeeease
DNAcopy cghMCR DNAcopy cghMCR
13.2 years ago nac ▴ 280
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0
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1.1k
views
seeking help on cghMCR pleeeease
DNAcopy cghMCR DNAcopy cghMCR
13.2 years ago nac ▴ 280
0
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0
replies
1.2k
views
Help on cghMCR units of gapAllowed
DNAcopy cghMCR DNAcopy cghMCR
13.2 years ago nac ▴ 280
0
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2
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1.8k
views
Tuning segment() in DNAcopy package to get more segments on each chromosome
DNAcopy UNDO DNAcopy UNDO
updated 13.3 years ago by 21k • written 13.3 years ago by ▴ 110
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0
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1.4k
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cghMCR package:Is it possible to find MCR by not usingDNAcopy object?
PROcess DNAcopy cghMCR PROcess DNAcopy cghMCR
13.4 years ago viritha kaza ▴ 580
0
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1
reply
1.6k
views
cghMCR package:Is it possible to find MCR by not using DNAcopy object?
DNAcopy cghMCR DNAcopy cghMCR
updated 13.4 years ago by ▴ 20 • written 13.4 years ago by ▴ 580
0
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1
reply
1.2k
views
DNAcopy segment() Infinite Loop
DNAcopy DNAcopy
updated 13.7 years ago by ▴ 40 • written 13.7 years ago by ★ 1.6k
2
votes
1
reply
1.8k
views
DNAcopy
DNAcopy copynumber DNAcopy copynumber
updated 13.7 years ago by 21k • written 13.7 years ago by ▴ 140
0
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2
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1.5k
views
DNA copy ploting function
probe DNAcopy probe DNAcopy
13.7 years ago nac ▴ 280
0
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1
reply
1.1k
views
[Fwd: Problem with DNAcopy plot function ??]
DNAcopy DNAcopy
updated 13.8 years ago by ★ 13k • written 13.8 years ago by ▴ 280
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0
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900
views
[Fwd: Problem with DNAcopy plot function ??]
DNAcopy DNAcopy
13.8 years ago nac ▴ 280
0
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0
replies
970
views
How to get defenitive Amp/del/nochange using DNAcopy package?
graph DNAcopy graph DNAcopy
13.8 years ago Chiho Kwon ▴ 10
0
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1
reply
1.1k
views
DNAcopy installation error
DNAcopy DNAcopy
updated 15.0 years ago by 25k • written 15.0 years ago by ▴ 10
0
votes
0
replies
1.3k
views
DNAcopy
aCGH impute DNAcopy aCGH snapCGH CGHcall aCGH impute DNAcopy aCGH snapCGH CGHcall
15.1 years ago Daniel Rico ▴ 110
0
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0
replies
1.1k
views
DNAcopy
aCGH DNAcopy aCGH aCGH DNAcopy aCGH
15.1 years ago Anguraj Sadanandam ▴ 10
0
votes
2
replies
1.3k
views
Reproducibility of DNAcopy segmentation
DNAcopy DNAcopy
updated 15.1 years ago by 21k • written 15.1 years ago by ▴ 20
50 results • Page 1 of 1
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Comment: How to formulate 2 factor nested design in DESeq2 by Mariane • 0
Hi JK Kim, I'm having a problem similar to the one you reported. Could you please tell me how you solved this problem? Thanks
Comment: batch effect removal for agilent microarray data by gaye.yilmaz • 0
Thank you
Answer: Pathview visualisation not including positive log2 fold changes by James W. MacDonald 68k
Without providing a self-contained example, nobody can tell you if/where you went wrong. Since you get a KEGG pathway with some of the gene…
Comment: Differential variance analysis - can i use deseq2 by Marwan • 0
Thanks Michael for your answer, i didnt mean to use Deseq2 directly for the variance testing, but more like asking if using the (VST) data…
Answer: Differential variance analysis - can i use deseq2 by Michael Love 43k
We don't have a test of differential variance but other Bioconductor packages can, check similar posts (even on the right side bar) or use …
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Suggesting changing the "reply-to" field to the mailing list address.
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
A: How to extract DESeq2 results for an interaction design
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
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