Bioconductor Alternative splicing

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846

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psichomics SUPPA Splicing Alternative Splicing Retained Introns

4.1 years ago noahhelton98 ▴ 20

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1.1k

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sgseq alternative splicing rna seq

updated 3 months ago by Sara • 0 • written 5.0 years ago by 116100016 • 0

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969

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rna seq SGSeq Alternative splicing

updated 5.1 years ago by Leonard Goldstein ▴ 260 • written 5.1 years ago by 116100016 • 0

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1.2k

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aspli readCounts rna-seq alternative splicing AS

5.8 years ago fernandalpcosta ▴ 10

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R alternative splicing ASpli AsDiscover

5.9 years ago abdul rawoof ▴ 60

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1.1k

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rnaseq alternative splicing ASpli

6.0 years ago nicolas.guyon2 • 0

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1.7k

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rna-seq alternative splicing SGSeq

6.1 years ago andrea.bast • 0

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1.5k

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maser R rMATs alternative splicing

6.2 years ago Reza • 0

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limma rna-seq alternative splicing

updated 7.1 years ago by Gordon Smyth 52k • written 7.1 years ago by lirongrossmann ▴ 80

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limma voom alternative splicing

8.7 years ago osa.zuta ▴ 40

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sgseq splicing alternative splicing

updated 8.7 years ago by Leonard Goldstein ▴ 260 • written 8.7 years ago by vakul.mohanty ▴ 20

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1.2k

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deseq2 dexseq alternative splicing

updated 9.0 years ago by Michael Love 43k • written 9.0 years ago by sahiilseth • 0

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2.4k

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DEXSeq DESeq2 dexseq deseq2 alternative splicing

9.2 years ago Fahmi Nazarie • 0

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dexseq alternative splicing exon skipping

updated 9.7 years ago by Simon Anders ★ 3.8k • written 9.7 years ago by ebadr • 0

14 results • Page 1 of 1

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Comment: Crossover design with limma by SamGG ▴ 360

IMHO, here are the missing annotations treatmentdrug_orderDrugPlac - treatmentplacebo_orderDrugPlac, # effect of drug for the Drug…

Answer: What type of counts data to import for performing Isoform analysis in edgeR by ATpoint ★ 4.5k

You don't need any of these files. You need the `catchSalmon` function which reads `quant.sf` and the inferential (Bootstrap/Gibbs) replica…

Comment: makeContrastsDream for Interaction by abadgerw • 0

Thank you! I will try this out.

Comment: Merge Replicates vs Mixed Model by abadgerw • 0

Thanks, @gabrielhoffman The data is actually proteomics so it is intensity data which is why I did not use voom but rather ran ebayes wi…

Comment: ANOVA like approach of edgeR by Gordon Smyth 52k

To identify common upregulated or downregulated genes, you would need to test for media condition contrasts for each cell type separately, …

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Comment: Crossover design with limma

Answer: DESeq2 normalization vs VST vs rlog

Comment: makeContrastsDream for Interaction

Answer: Limma- Print-tip loess normalisation-printer layout information does not match M

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