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News: Translation Hackathon (community event) announcement
event translation community
23 months ago kozo.nishida • 0
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0
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792
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Bioconductor: Ambiguous Amino Acids & Gap Sequences
Translation Biostrings
2.8 years ago emmanuel.verde2939 • 0
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1
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960
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aaVariation function bug (Methonine instead of Leucine)
customprodb translation
updated 5.9 years ago by ▴ 50 • written 6.2 years ago by • 0
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1
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856
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Point mutation to corresponding amino acid
point mutation aminoacid translation
updated 8 months ago by • 0 • written 5.9 years ago by • 0
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2
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6.0k
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translate DNA sequence to Amino acid sequence in a dataframe
translation
updated 7.3 years ago by 25k • written 7.3 years ago by ▴ 20
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5
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6.1k
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How to reverse translate amino acid sequence into mammalian codon optimised cDNA
convert translation
written 9.6 years ago by ▴ 20
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1.0k
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Translate to aminoacid, align pairwise and un-translate back to DNA
translation pairwisealignment
7.8 years ago igferres • 0
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5
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3.3k
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How to find the amino acid codon corresponding to a translated genomic position
genomicranges genomicfeatures translation
updated 4 months ago by ▴ 10 • written 8.5 years ago by ▴ 10
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Job: Associate Scientist - NGS Informatics @ AstraZeneca (Metro Boston, MA)
cancer translation ngs genomics Job
9.2 years ago jhjohnsn • 0
9 results • Page 1 of 1
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Comment: EnhancedVolcano results in an empty plot by Patadù ▴ 10
Hi James, I do not know if it might be of interest for you, but in the end I could plot the Volcano plot. I did have to use the `lfcShrink(…
Answer: Behaviour of featureCounts when quantifying multi-mapping reads by Yang Liao ▴ 400
Both `v1.5.0` and `v1.6.4` versions are very old. I suggest upgrading to `v2.0.6` (the latest version). There was a change regarding the `…
Comment: Error: no such table: main.gene2pubmed when running makeOrgPackageFromNCBI() fr by Ozan • 0
Sounds good. Thanks again!
Comment: Error: no such table: main.gene2pubmed when running makeOrgPackageFromNCBI() fr by James W. MacDonald 66k
Ah, ok. Doesn't really matter though. Try using `UniProt.ws`.
Comment: Error: no such table: main.gene2pubmed when running makeOrgPackageFromNCBI() fr by Ozan • 0
I believe my `NCBI.sqlite` database is located in the same directory, but for some reason it seems to be empty. Even in the File explorer i…
Votes
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Comment: Error: no such table: main.gene2pubmed when running makeOrgPackageFromNCBI() fr
Comment: Error: no such table: main.gene2pubmed when running makeOrgPackageFromNCBI() fr
Comment: Error: no such table: main.gene2pubmed when running makeOrgPackageFromNCBI() fr
Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
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