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10.0 years ago rancoita.paola • 0
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10.5 years ago • updated 10.1 years ago Wolfgang Huber ★ 13k
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10.1 years ago gr231 ▴ 10
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News: Ensembl 78 release is out!
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10.3 years ago amonida ▴ 20
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10.4 years ago • updated 10.3 years ago Dan Tenenbaum ★ 8.2k
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10.4 years ago • updated 10.3 years ago Wolfgang Huber ★ 13k
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10.3 years ago Sonali Arora ▴ 390
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News: European Bioconductor Developers' Meeting 12th-13th January 2015, Heidelberg
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10.4 years ago Wolfgang Huber ★ 13k
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10.4 years ago Thomas Maurel ▴ 800
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10.4 years ago gagneur ▴ 10
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10.4 years ago Valerie Obenchain ★ 6.8k
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News: Recent course materials now easily searchable
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News: New Flow Cytometry Data Analysis Framework
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10.5 years ago Greg Finak ▴ 150
533 results • Page 11 of 11
Recent ...
Replies
Comment: Use of limma R package with targeted proteomics for DE analysis by svlachavas ▴ 840
Dear Gordon, thank you for returning back ! Actually the output is not "NPX"-as indeed it most frequent output for a lot of pannels-but as …
Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k
If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…
Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0
why aren't there any answers?
Comment: Too many significant genes when integrating gtex and tcga by Jane • 0
I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…
Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180
Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…
Votes
A: What is the "linear model" part used for in Limma?
Comment: Use of limma R package with targeted proteomics for DE analysis
A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
Answer: Vertical line at A=0, nothing else, on MA plot
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