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News:
About the recent flurry of spam posts
security
spam
News
8.9 years ago
Dan Tenenbaum
★ 8.2k
4
votes
9
replies
3.5k
views
News:
Ensembl release 84 is out!
ensembl
mart
release84
biomart
ensembl release
News
updated 8.9 years ago by
arielpaulson
▴ 20 • written 9.0 years ago by
Thomas Maurel
▴ 800
5
votes
1
reply
3.7k
views
News:
Bioconductor-related papers -- special F1000Research collection for Bioc2016
publication
workflows
benchmark
teaching
News
updated 8.9 years ago by
thomas.ingraham
▴ 10 • written 8.9 years ago by
Wolfgang Huber
★ 13k
2
votes
0
replies
1.6k
views
News:
Course: Analysis of RNA-seq and ChIP-seq data, March 29th - April 1st, Oeiras, Portugal
Course
workshop
News
9.0 years ago
Mark Dunning
★ 1.1k
0
votes
1
reply
1.3k
views
News:
Bioconductor 3.3 release schedule
release schedule
News
9.0 years ago
Dan Tenenbaum
★ 8.2k
0
votes
0
replies
1.6k
views
News:
New Package Submission Deadline
Packages
News
9.0 years ago
Martin Morgan
25k
3
votes
0
replies
1.6k
views
News:
Course: Statistics and Computing in Genome Data Science, July 10-15, 2016
course
training
News
9.0 years ago
Martin Morgan
25k
0
votes
0
replies
1.7k
views
News:
Announcing short course in computational proteomics, May 2-6, 2016, Boston MA
proteomics
tutorial
mass spectrometry
computational biology
News
9.1 years ago
Olga Vitek
▴ 40
0
votes
0
replies
955
views
News:
AnnotationHub server downtime - Friday, Feb 5, 12:00PM-4:00PM PST
downtime
annotationhub
News
9.1 years ago
Dan Tenenbaum
★ 8.2k
1
vote
0
replies
1.5k
views
News:
Announcing the EnrichmentBrowser 2.0
genesetenrichment
functional enrichment
enrichmentbrowser
News
9.1 years ago
Ludwig Geistlinger
▴ 70
0
votes
0
replies
945
views
News:
bioconductor.org scheduled downtime, Tuesday, January 19th, 3:00PM PST
downtime
News
9.1 years ago
Dan Tenenbaum
★ 8.2k
5
votes
0
replies
1.1k
views
News:
Bioconductor Newsletter: January 2016
news
newsletter
bioconductor
News
9.2 years ago
Valerie Obenchain
★ 6.8k
13
votes
1
reply
3.2k
views
News:
Updated Bioconductor Package Submission Policy
package
submission
News
9.2 years ago
Martin Morgan
25k
0
votes
0
replies
1.2k
views
News:
bioconductor.org scheduled downtime, Thursday, December 31st, 12:01PM PST
downtime
News
9.2 years ago
Dan Tenenbaum
★ 8.2k
0
votes
0
replies
1.8k
views
News:
Ensembl 83 is out!
ensemble mart
ensembl
biomart
ensembl release
News
9.2 years ago
amonida
▴ 20
6
votes
0
replies
2.9k
views
News:
F1000 research sponsored prize for contribution to Support forum
news
News
9.3 years ago
Mark Dunning
★ 1.1k
0
votes
0
replies
901
views
News:
AnnotationHub downtime Wed 11/4
news
News
9.3 years ago
Dan Tenenbaum
★ 8.2k
1
vote
3
replies
1.4k
views
News:
PLEASE READ: devel packages in release channel
news
News
9.4 years ago
Dan Tenenbaum
★ 8.2k
7
votes
5
replies
3.3k
views
News:
European Bioconductor Developers Meeting: Cambridge 7/8th December 2015
developers
conference
workshop
News
updated 9.4 years ago by
Laurent Gatto
1.6k • written 9.5 years ago by
Mark Dunning
★ 1.1k
1
vote
0
replies
1.4k
views
News:
Bug found and fixed in bumphunter's bootstrap method
bumphunter
News
9.4 years ago
rafa
▴ 60
8
votes
10
replies
2.6k
views
News:
Bioconductor 3.2 is released!
news
News
updated 9.4 years ago by
JunLVI
▴ 40 • written 9.4 years ago by
Dan Tenenbaum
★ 8.2k
0
votes
0
replies
1.7k
views
News:
Ensembl GRCh37 release 82 - second data update
ensembl
biomart
News
grch37
GRCh37
9.4 years ago
amonida
▴ 20
0
votes
0
replies
1.6k
views
News:
C1omics: single-cell omics methods and applications, Manchester 24-25 Nov 2015
single cell
conference
workshop
News
9.4 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
1.4k
views
News:
IPI numbers in annotation packages
annotation
proteomics
uniprot.ws
News
9.4 years ago
James W. MacDonald
68k
2
votes
0
replies
872
views
News:
Bioconductor Newsletter - October 2015
bioconductor
news
newsletter
News
9.4 years ago
Valerie Obenchain
★ 6.8k
0
votes
0
replies
1.3k
views
News:
Ensembl release 82 is out!
biomart
ensembl
release82
variation
mouse
News
9.4 years ago
Thomas Maurel
▴ 800
0
votes
0
replies
887
views
News:
new Bioconductor team members
news
bioconductor
News
updated 9.5 years ago by
Dan Tenenbaum
★ 8.2k • written 9.5 years ago by
Valerie Obenchain
★ 6.8k
3
votes
0
replies
2.5k
views
News:
BMC Source Code for Biology and Medicine: R/Bioconductor Workflows Section is calling for papers
workflows
publish
News
9.5 years ago
Levi Waldron
★ 1.1k
2
votes
0
replies
3.9k
views
News:
Gencode GFF3 and FASTA files now available via AnnotationHub
AnnotationHub
Gencode
GFF3
FASTA
News
9.5 years ago
Sonali Arora
▴ 390
0
votes
0
replies
1.4k
views
News:
Call for papers: Special issue on Statistical and Computational methods for genomics and integrative genomics
news
call
News
9.5 years ago
rancoita.paola
• 0
3
votes
0
replies
2.0k
views
News:
BioCAsia, 8 Sept 2015, Tokyo
sequencing
transcription
epigenomics
visualization
infrastructure
News
9.7 years ago • updated 9.6 years ago
Matthew Ritchie
▴ 1000
0
votes
0
replies
1.3k
views
News:
gwascat package updated: new features in devel branch
GWAS
genetic epidemiology
SNP
News
9.6 years ago
Vincent J. Carey, Jr.
6.7k
5
votes
1
reply
1.9k
views
News:
Bioc2015 conference ongoing now.
bioconductor
conference
News
9.6 years ago
Sean Davis
21k
5
votes
2
replies
3.1k
views
News:
Ensembl release 81 is out!
human
mouse
GRCh38
biomart
Ensembl
News
updated 9.6 years ago by
Sonali Arora
▴ 390 • written 9.6 years ago by
Thomas Maurel
▴ 800
6
votes
0
replies
2.3k
views
News:
BioC 2015 Annual Conference
BioC2015
News
9.9 years ago • updated 9.7 years ago
Martin Morgan
25k
0
votes
0
replies
1.2k
views
News:
New Bioconductor channel on F1000Research
bioconductor
news
News
9.7 years ago
Sean Davis
21k
2
votes
0
replies
960
views
News:
Bioconductor Newsletter - July 2015
newsletter
news
News
9.7 years ago
Valerie Obenchain
★ 6.8k
4
votes
2
replies
2.0k
views
News:
Announcing new test coverage shields
test coverage
News
9.7 years ago
Dan Tenenbaum
★ 8.2k
4
votes
0
replies
1.7k
views
News:
Hands-on Bioconductor course, 7 Sept 2015, Tokyo
sequencing
transcription
variantfiltering
annotation
News
9.7 years ago
Matthew Ritchie
▴ 1000
6
votes
6
replies
3.8k
views
News:
Bioconductor Git/GitHub Mirrors
git
github
git-svn bridge
subversion
News
updated 9.7 years ago by
Guangchuang Yu
★ 1.2k • written 9.7 years ago by
Dan Tenenbaum
★ 8.2k
0
votes
0
replies
1.6k
views
News:
Rebuilding annotation packages for Affymetrix Gene/Exon ST Arrays
affymetrix
annotation
microarray
News
9.8 years ago
James W. MacDonald
68k
0
votes
0
replies
1.1k
views
News:
support site / tracker / registration site - scheduled downtime tomorrow
news
News
9.8 years ago
Dan Tenenbaum
★ 8.2k
9
votes
1
reply
2.5k
views
News:
Ensembl release 80 is out!
biomart
Ensembl
zebrafish
Rat
1000 genomes phase 3
News
updated 9.8 years ago by
Sonali Arora
▴ 390 • written 9.8 years ago by
Thomas Maurel
▴ 800
0
votes
2
replies
1.7k
views
News:
Looking to attend to a Bioconductor course for biologists in Europe
course
News
updated 9.8 years ago by
andrew.j.skelton73
▴ 370 • written 9.8 years ago by
laianavarromartin
▴ 20
0
votes
0
replies
1.5k
views
News:
BioC 2015 Conference Posters
news
bioc2015
News
9.9 years ago
Valerie Obenchain
★ 6.8k
0
votes
0
replies
1.2k
views
News:
Bioconductor 3.1 is released!
release
News
9.9 years ago
Dan Tenenbaum
★ 8.2k
1
vote
0
replies
948
views
News:
Bioconductor Newsletter - April 2015
newsletter
News
9.9 years ago
Valerie Obenchain
★ 6.8k
0
votes
0
replies
1.7k
views
News:
Ensembl GRCh37 release 79 data update
biomart
ensembl
release
news
GRCh37
News
9.9 years ago
Thomas Maurel
▴ 800
0
votes
2
replies
1.9k
views
News:
ChIPpeakAnno::getAnnotation get Exons
chippeakanno
News
updated 9.9 years ago by
Ou, Jianhong
★ 1.3k • written 10.0 years ago by
Julie Zhu
★ 4.3k
0
votes
0
replies
1.5k
views
News:
Conference in mathematical and quantitative omics, May, 29th, London
conference
News
10.0 years ago
Tiphaine Martin
▴ 40
533 results • Page
10 of 11
Recent ...
Replies
Comment: Use of limma R package with targeted proteomics for DE analysis
by
svlachavas
▴ 840
Dear Gordon, thank you for returning back ! Actually the output is not "NPX"-as indeed it most frequent output for a lot of pannels-but as …
Comment: how many significant figures are there in DESeq2 output
by
ATpoint
★ 4.7k
If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…
Comment: Compare TCGA-PAAD with GTEx gene expression
by
Jane
• 0
why aren't there any answers?
Comment: Too many significant genes when integrating gtex and tcga
by
Jane
• 0
I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…
Comment: how many significant figures are there in DESeq2 output
by
Matthew McCormack
▴ 180
Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…
Votes
Comment: Use of limma R package with targeted proteomics for DE analysis
A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
Answer: Vertical line at A=0, nothing else, on MA plot
Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
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