Showing : mirna • reset
1
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4
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656
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controling for batch effect while preserving variation within repeated measures that unevenly distributed across batches
miRNA BatchEffect RNASeq limma
6 months ago Wending • 0
1
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4
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705
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How to annotate mir4.1 arrays?
AffymetrixChip miRNA oligo
12 months ago • updated 9 months ago richardallenfriedmanbrooklyn ▴ 20
1
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1
reply
787
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Library sizes of miRNA sequencing data and TMM normalization with Edge-R
edgeR SequencingData miRNA TMM Normalization
updated 15 months ago by 50k • written 15 months ago by • 0
6
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6
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1.4k
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Too many differentially expressed miRNA with limma
limma miRNA Microarray
18 months ago • updated 17 months ago Sara ▴ 10
1
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3
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1.7k
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miRNA differential expression analysis - treat as transcript level?
tximport DESeq2 edgeR swish miRNA
updated 23 months ago by 42k • written 23 months ago by • 0
0
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1
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595
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miRNA analysis with DESeq2
mirna DESeq2
updated 2.0 years ago by 42k • written 2.0 years ago by • 0
2
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2
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961
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edgeR: How to display/plot individual miRNAs found to be differentialy expressed?
miRNAData miRNA DifferentialExpression edgeR
2.0 years ago Sarah • 0
0
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3
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858
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DESEQ PCA
DESeq2 miRNA
updated 2.7 years ago by ★ 1.4k • written 2.7 years ago by • 0
0
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1
reply
891
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How to calculate high and low tumor mutational burden
SomaticMutation miRNA
updated 3.0 years ago by ★ 4.1k • written 3.0 years ago by ▴ 20
0
votes
1
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1.4k
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edgeR on microRNA data
miRNA edgeR miRNA edgeR
updated 3.0 years ago by 50k • written 12.6 years ago by ▴ 50
0
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1
reply
842
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mircomb analysis from deg's list
mircomb mrna mirna degs interaction
3.9 years ago andreia ▴ 10
6
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4
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2.6k
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Affymetrix miRNA4.1 / oligo package / pd.mirna.4.1
microarray mirna oligo package pdinfobuilder pd.mirna
updated 4.5 years ago by ▴ 10 • written 6.9 years ago by ▴ 20
0
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2
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1.2k
views
Very high threshold for independent filtering
deseq2 mirna independent filtering
updated 5.2 years ago by 42k • written 5.2 years ago by • 0
0
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5
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1.4k
views
Hill shape p-value histogram after differential miRNA expression analysis with DESeq2
deseq2 mirna fdrtool
updated 5.2 years ago by ★ 3.3k • written 5.2 years ago by • 0
1
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8
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2.5k
views
Trying to map nucleotide position from a transcript to genomic location
genomicfeatures mapfromtranscripts mirna
updated 5.7 years ago by ★ 6.8k • written 5.7 years ago by ▴ 20
1
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2
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1.1k
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Whether "read_counts_miRNA" or "reads_per_million_miRNA" to use for DE expression analysis using DeSeq2
tcgadownload deseq2 mirna normalization
updated 5.9 years ago by ▴ 120 • written 5.9 years ago by • 0
0
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0
replies
1.2k
views
miR2Pathway Finite Observations
pathway analysis mirna parallel
6.2 years ago genomic8328 ▴ 10
2
votes
0
replies
1.2k
views
Job: PhD Studentship - Investigating Regulation of Transcription and Translation in Prostate Cancer
mirna riboseq smallrna differential gene expression Job
6.2 years ago Andy Lynch ▴ 120
0
votes
1
reply
1.2k
views
Best way to analyze multiple treatments using DESeq2?
deseq2 rna-seq mirna
updated 6.2 years ago by 42k • written 6.2 years ago by • 0
0
votes
0
replies
1.2k
views
Custom graphNEL object for pathview
pathview mirintegrator miRNA
6.6 years ago drowsygoat ▴ 30
4
votes
3
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3.8k
views
EdgeR on miRNA data
edger miRNA
updated 7.1 years ago by ★ 28k • written 7.1 years ago by • 0
0
votes
4
replies
4.5k
views
miRNA-seq data analysis
miRNA mirna-seq
updated 7.2 years ago by ▴ 250 • written 7.2 years ago by • 0
0
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0
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1.6k
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miRNA target prediction tool(package) using R
mirna prediction target
7.2 years ago Adam • 0
1
vote
1
reply
1.0k
views
miRNA normalization for large amount of samples using LVSmiRNA
mirna normalization
7.6 years ago • updated 7.4 years ago carleshf ▴ 10
2
votes
5
replies
1.7k
views
miRNA Probe IDs
mirna microarray mirbase.db
updated 7.6 years ago by ★ 1.5k • written 7.6 years ago by • 0
1
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2
replies
1.8k
views
Rsubread align for miRNAseq?
rsubread miRNA
updated 7.6 years ago by ★ 3.6k • written 7.6 years ago by ▴ 620
0
votes
2
replies
959
views
Differential expression of one group agains all samples
deseq2 mirna differential gene expression
updated 7.6 years ago by ▴ 680 • written 7.6 years ago by ▴ 10
0
votes
2
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2.1k
views
TPM for miRNA tags
mirna
7.6 years ago manoharankumar01 • 0
0
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0
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1.3k
views
Normalizing miRNA-1_0 and miRNA-1_0_2Xgain type arrays simultaneously
mirna microarray normalization
7.7 years ago arisarkar88 ▴ 40
3
votes
6
replies
4.4k
views
Affymetrix miRNA 4.0 Normalization and Analysis
R Limma microarray miRNA
updated 3.0 years ago by ▴ 10 • written 8.3 years ago by ▴ 90
4
votes
6
replies
2.8k
views
limma: within-array duplicates correlation
limma mirna microarray
updated 8.3 years ago by ★ 28k • written 8.3 years ago by • 0
0
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0
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1.4k
views
get precursor mirna from mature mirna
bioconductor mirna mir mirbase.db
8.4 years ago C T ▴ 140
3
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4
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1.8k
views
Network generation from adjacency matrix of zeroes and ones
R adjacency matrix mirna
8.4 years ago alptaciroglu ▴ 50
0
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0
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1.5k
views
miRNA 3D-Gene chips Toray
Toray 3D-Gene miRNA limma
8.6 years ago santi.cabellos ▴ 10
0
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0
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1.0k
views
targetScan R errors
targetscan R error handling miRNA
8.6 years ago alptaciroglu ▴ 50
1
vote
5
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1.5k
views
normalization of a miRNA microarray
normalization vsn eximir microarray miRNA
updated 8.7 years ago by ★ 13k • written 8.7 years ago by ▴ 50
1
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1
reply
1.2k
views
How can get the GO and KEGG miRNA microarray Agilent?
go kegg limma microarray mirna
8.7 years ago santi.cabellos ▴ 10
2
votes
5
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2.0k
views
Problems with "read.agiMicroRna"
read.agiMicroRna agilent limma microarray mirna
updated 8.7 years ago by ▴ 30 • written 8.7 years ago by ▴ 10
4
votes
2
replies
2.2k
views
Detect global differences in miRNA expression between tumor and normal using spike-ins
edger limma mirna sequencing
updated 8.9 years ago by ★ 28k • written 8.9 years ago by ▴ 40
2
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5
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3.0k
views
miRNA expression analysis : annotation
miRNA annotation affymetrixchip
9.1 years ago aswathym ▴ 10
0
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0
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1.0k
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Invitation Research Collaborations
cancer microarray mirna sequencing
9.1 years ago alexandru.floares • 0
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0
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1.8k
views
News: RNAseq data analysis courses: Torino (Italy) : Beginner course March 17-19 2015 & Advance Course April 14-16 2015
rnaseq mirna onechannelgui chimera News
9.4 years ago raffaele calogero ▴ 500
6
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2
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1.9k
views
Should I skip the eBayes step when using Limma for Affymetrix miRNA v1 chip?
miRNA cdf probe limma miRNA cdf probe limma
updated 9.6 years ago by 50k • written 9.7 years ago by ★ 13k
3
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1
reply
1.3k
views
Bioinformatics researching Schizophrenia
miRNA
updated 9.7 years ago by ★ 6.8k • written 9.7 years ago by ★ 13k
0
votes
5
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2.0k
views
Using custom CDF with 'make.cdf.env'
miRNA cdf probe miRNA cdf probe
updated 9.7 years ago by ▴ 130 • written 9.7 years ago by ★ 13k
0
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0
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4.1k
views
cpm cutoff (edgeR) [was: total count filter cutoff (edgeR)]
Sequencing miRNA edgeR Sequencing miRNA edgeR
9.9 years ago Gordon Smyth 50k
0
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0
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1.1k
views
total count filter cutoff (edgeR)
miRNA edgeR miRNA edgeR
9.9 years ago Daniel ▴ 10
0
votes
0
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1.3k
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QuasR for miRNA
miRNA QuasR miRNA QuasR
10.0 years ago Michael Stadler ▴ 350
0
votes
4
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1.6k
views
combat error message
miRNA Normalization affy miRNA Normalization affy
updated 10.0 years ago by ★ 13k • written 10.0 years ago by ▴ 850
0
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0
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1.0k
views
ComBat error message, thanks
miRNA Normalization affy miRNA Normalization affy
10.0 years ago Guan ▴ 20
50 results • Page 1 of 1
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Comment: Ensembl plants at annotationHub? by Daniele • 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
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Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…
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So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!
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Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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