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mouse
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reset
0
votes
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replies
653
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TFutils database
TFutils
mouse
gene
convert
3.0 years ago
nicocillari
• 0
3
votes
4
replies
1.5k
views
AnnotationData package for Affymetrix HT MG-430 PM Array Plate
RNAseq
Affymetrix
Mouse
updated 3.7 years ago by
Guido Hooiveld
★ 4.0k • written 3.7 years ago by
olrema
• 0
1
vote
3
replies
2.3k
views
AnnotationHub timeout for Ensembl Mouse GTF
AnnotationHub
Ensembl
Mouse
AnnotationHub Ensembl
4.5 years ago
dmgatti
▴ 10
0
votes
3
replies
1.1k
views
Choosing DESeq2 design for mice experiment
deseq2
mouse
rnaseq
6.5 years ago
Emilie
• 0
0
votes
1
reply
1.7k
views
org.Mm.eg.db UNIPROT missing values
Annotation
mouse
UNIPROT
updated 6.7 years ago by
Mike Smith
★ 6.5k • written 6.7 years ago by
julie.chevalier
• 0
6
votes
1
reply
6.4k
views
Finding orthologous human/mouse ENSEMBL IDs
human
mouse
ensembl
annotationdbi
homologue
7.0 years ago
Keith Hughitt
▴ 180
0
votes
1
reply
1.2k
views
Annotation for Mouse Illumina Expression Chip V6.1.1
bead chip
Annotation
Mouse
Lumi
probeID2nuID
updated 7.9 years ago by
Andy Lynch
▴ 120 • written 7.9 years ago by
smt8n
• 0
0
votes
0
replies
1.2k
views
News:
Ensembl release 82 is out!
biomart
ensembl
release82
variation
mouse
News
8.7 years ago
Thomas Maurel
▴ 800
5
votes
2
replies
2.7k
views
News:
Ensembl release 81 is out!
human
mouse
GRCh38
biomart
Ensembl
News
updated 8.9 years ago by
Sonali Arora
▴ 390 • written 8.9 years ago by
Thomas Maurel
▴ 800
9 results • Page
1 of 1
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Answer: Behaviour of featureCounts when quantifying multi-mapping reads
by
Yang Liao
▴ 400
Both `v1.5.0` and `v1.6.4` versions are very old. I suggest upgrading to `v2.0.6` (the latest version). There was a change regarding the `…
Comment: Error: no such table: main.gene2pubmed when running makeOrgPackageFromNCBI() fr
by
Ozan
• 0
Sounds good. Thanks again!
Comment: Error: no such table: main.gene2pubmed when running makeOrgPackageFromNCBI() fr
by
James W. MacDonald
66k
Ah, ok. Doesn't really matter though. Try using `UniProt.ws`.
Comment: Error: no such table: main.gene2pubmed when running makeOrgPackageFromNCBI() fr
by
Ozan
• 0
I believe my `NCBI.sqlite` database is located in the same directory, but for some reason it seems to be empty. Even in the File explorer i…
Comment: Error: no such table: main.gene2pubmed when running makeOrgPackageFromNCBI() fr
by
James W. MacDonald
66k
You have to do that in the directory that contains your NCBI.sqlite database. ``` > library(RSQLite) > con <- dbConnect(SQLite(), "thisfil…
Votes
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Comment: Error: no such table: main.gene2pubmed when running makeOrgPackageFromNCBI() fr
Comment: Error: no such table: main.gene2pubmed when running makeOrgPackageFromNCBI() fr
Comment: Error: no such table: main.gene2pubmed when running makeOrgPackageFromNCBI() fr
Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
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