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Comment: Comment: IsoformSwitchAnalyzeR: What are the SV values created in design matrix?
17 months ago k.vitting.seerup ▴ 120
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2.3k
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Answer: Answer: IsoformSwitchAnalyzeR: What are the SV values created in design matrix?
17 months ago k.vitting.seerup ▴ 120
0
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0
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2.4k
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Comment: Comment: Error in Create switchAnalyzeRlist
2.4 years ago k.vitting.seerup ▴ 120
0
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1
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2.4k
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Comment: Comment: Error in Create switchAnalyzeRlist
2.4 years ago k.vitting.seerup ▴ 120
0
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1
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2.4k
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Comment: Comment: Error in Create switchAnalyzeRlist
2.4 years ago k.vitting.seerup ▴ 120
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0
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1.1k
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Comment: Comment: IsoformSwitchAnalyzeR package on mouse data
2.4 years ago k.vitting.seerup ▴ 120
2
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2
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2.4k
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Answer: Answer: Error in Create switchAnalyzeRlist
2.4 years ago k.vitting.seerup ▴ 120
0
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1
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1.4k
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Comment: Comment: Joint disperstion estimation for DEXSeq and DESeq2
3.0 years ago k.vitting.seerup ▴ 120
3
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3
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1.4k
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Joint disperstion estimation for DEXSeq and DESeq2
DESeq2 DEXseq
updated 3.0 years ago by 43k • written 3.0 years ago by ▴ 120
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1.1k
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Comment: Comment: Turn of GSVA filtering for method ssGSEA
3.6 years ago k.vitting.seerup ▴ 120
2
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2
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1.1k
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Turn of GSVA filtering for method ssGSEA
GSVA
3.6 years ago k.vitting.seerup ▴ 120
0
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0
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1.9k
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Answer: Answer: Differential Transcript Usage: complex factorial design
3.6 years ago k.vitting.seerup ▴ 120
0
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0
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1.0k
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Answer: Answer: IsoformSwitchAnalyzeR: pvalues before FDR correction
3.6 years ago k.vitting.seerup ▴ 120
0
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0
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715
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pcaMethods percent missing interpretation
pcaMethods
4.0 years ago k.vitting.seerup ▴ 120
0
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3
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1.4k
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Revisiting gene name inclusion in TxDB
Bioconductor GenomicFeatures TxDB
updated 3.2 years ago by • 0 • written 4.2 years ago by ▴ 120
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0
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1.4k
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Comment: Comment: Revisiting gene name inclusion in TxDB
4.2 years ago k.vitting.seerup ▴ 120
0
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1
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2.0k
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Comment: C: RNA-Seq analysis with Limma/edgeR, time course experiment, aberrant results
4.3 years ago k.vitting.seerup ▴ 120
0
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1
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2.0k
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Comment: C: RNA-Seq analysis with Limma/edgeR, time course experiment, aberrant results
4.3 years ago k.vitting.seerup ▴ 120
0
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1
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2.0k
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Comment: C: Comparing discrete variable to PCA
4.4 years ago k.vitting.seerup ▴ 120
2
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4
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2.0k
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Comparing discrete variable to PCA
EDA pcaExplorer PCAtools PCA
updated 3.1 years ago by ▴ 20 • written 4.4 years ago by ▴ 120
0
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0
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1.6k
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Comment: C: Impose minimum restrictions on correlations in SingleR
5.0 years ago k.vitting.seerup ▴ 120
0
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1
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1.6k
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Comment: C: Impose minimum restrictions on correlations in SingleR
5.0 years ago k.vitting.seerup ▴ 120
2
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4
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1.6k
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Impose minimum restrictions on correlations in SingleR
single cell R SingleR
updated 5.0 years ago by ★ 28k • written 5.0 years ago by ▴ 120
1
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1
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1.5k
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Answer: A: Identify recurrent isoform switches using IsoformSwitchAnalyzeR in multiple rect
5.3 years ago k.vitting.seerup ▴ 120
0
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1
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1.5k
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Comment: C: Identify recurrent isoform switches using IsoformSwitchAnalyzeR in multiple rect
5.3 years ago k.vitting.seerup ▴ 120
3
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4
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1.7k
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What assays are distributed with Recount TX data
recount recount2 RangedSummarizedExperiment
updated 5.4 years ago by ★ 1.1k • written 6.2 years ago by ▴ 120
5
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11
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4.5k
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FeatureCounts counts wrongly when quantifying mixed paired and unpaired reads
rsubread featureCounts
updated 2.8 years ago by ▴ 10 • written 5.8 years ago by ▴ 120
0
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1
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4.5k
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Comment: C: FeatureCounts counts wrongly when quantifying mixed paired and unpaired reads
5.7 years ago k.vitting.seerup ▴ 120
0
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1
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4.5k
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Comment: C: FeatureCounts counts wrongly when quantifying mixed paired and unpaired reads
5.7 years ago k.vitting.seerup ▴ 120
0
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1
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4.5k
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Comment: C: FeatureCounts counts wrongly when quantifying mixed paired and unpaired reads
5.8 years ago k.vitting.seerup ▴ 120
0
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1
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3.0k
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Comment: C: error in aSwitchlist (isoformswitchanalyzeR)
5.8 years ago k.vitting.seerup ▴ 120
1
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1
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3.0k
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Answer: A: error in aSwitchlist (isoformswitchanalyzeR)
5.8 years ago k.vitting.seerup ▴ 120
0
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1
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3.0k
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Comment: C: error in aSwitchlist (isoformswitchanalyzeR)
5.8 years ago k.vitting.seerup ▴ 120
0
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1
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3.0k
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Comment: C: error in aSwitchlist (isoformswitchanalyzeR)
5.8 years ago k.vitting.seerup ▴ 120
1
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0
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1.5k
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Comment: C: Parallel computing for IsoformSwitchAnalyzeR
5.9 years ago k.vitting.seerup ▴ 120
1
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1
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1.5k
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Answer: A: Parallel computing for IsoformSwitchAnalyzeR
5.9 years ago k.vitting.seerup ▴ 120
1
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0
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1.2k
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Comment: C: Does IHW use the supplied alpha for the correction calculations?
5.9 years ago k.vitting.seerup ▴ 120
8
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2
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1.2k
views
Does IHW use the supplied alpha for the correction calculations?
IHW deseq2
updated 5.9 years ago by ▴ 180 • written 5.9 years ago by ▴ 120
0
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1
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1.7k
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Comment: C: Bug in rtracklayer::import of amino acid fasta sequences
6.0 years ago k.vitting.seerup ▴ 120
3
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3
replies
1.7k
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Bug in rtracklayer::import of amino acid fasta sequences
rtracklayer fasta import Biostrings
updated 6.0 years ago by ★ 11k • written 6.0 years ago by ▴ 120
0
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1
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1.5k
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Comment: C: Can DEXSeq ouput be used directly as an input for IsoformSwitchAnalyzeR
6.1 years ago k.vitting.seerup ▴ 120
0
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2
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1.5k
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Answer: A: Can DEXSeq ouput be used directly as an input for IsoformSwitchAnalyzeR
6.1 years ago k.vitting.seerup ▴ 120
1
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1
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5.3k
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Comment: C: Tximport with RSEM error
6.2 years ago k.vitting.seerup ▴ 120
0
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1
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1.7k
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Comment: C: What assays are distributed with Recount TX data
6.2 years ago k.vitting.seerup ▴ 120
3
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1
reply
1.2k
views
ANOVA-like test via treat() in limma
limma anova
updated 6.5 years ago by 52k • written 6.5 years ago by ▴ 120
0
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0
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1.6k
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Answer: A: Extract sequences corresponding to TCONS IDs from spliceR
7.0 years ago k.vitting.seerup ▴ 120
0
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0
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913
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Comment: C: for loop not working!
7.2 years ago k.vitting.seerup ▴ 120
0
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0
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2.0k
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Comment: C: How to use limma to do regularization for Ballgown
7.2 years ago k.vitting.seerup ▴ 120
1
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0
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1.6k
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Answer: A: RNA-seq for DGE
7.2 years ago k.vitting.seerup ▴ 120
0
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0
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1.2k
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Answer: A: Running model separately for each cell line or as the same model?
7.2 years ago k.vitting.seerup ▴ 120
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