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0
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1.2k
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Comment: C: does readVcf mistakenly ignore ploidy for missing genotypes?
7.7 years ago TimothéeFlutre ▴ 80
0
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2
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1.2k
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does readVcf mistakenly ignore ploidy for missing genotypes?
readvcf gt missing VariantAnnotation
7.7 years ago TimothéeFlutre ▴ 80
0
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0
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1.5k
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Comment: C: error when plotting aligned reads depending on the length of the displayed regio
7.8 years ago TimothéeFlutre ▴ 80
0
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0
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1.5k
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Comment: C: error when plotting aligned reads depending on the length of the displayed regio
7.8 years ago TimothéeFlutre ▴ 80
0
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5
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1.5k
views
error when plotting aligned reads depending on the length of the displayed region
gviz plottracks alignmentstrack
updated 7.8 years ago by • 0 • written 7.8 years ago by ▴ 80
0
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0
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1.5k
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Comment: C: error when plotting aligned reads depending on the length of the displayed regio
7.8 years ago TimothéeFlutre ▴ 80
1
vote
1
reply
1.4k
views
Add main title to ggbio's karyogram
ggbio karyogram granges
updated 8.1 years ago by ★ 11k • written 8.1 years ago by ▴ 80
3
votes
1
reply
5.7k
views
extract subsequence(s) from DNAStringSet with getSeq
dnastringset getseq
updated 8.4 years ago by 16k • written 8.4 years ago by ▴ 80
0
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0
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2.6k
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Comment: C: different results between Rsamtools::pileup and samtools depth
8.5 years ago TimothéeFlutre ▴ 80
0
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1
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2.6k
views
Comment: C: different results between Rsamtools::pileup and samtools depth
8.5 years ago TimothéeFlutre ▴ 80
1
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6
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2.6k
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different results between Rsamtools::pileup and samtools depth
rsamtools pileup
8.5 years ago TimothéeFlutre ▴ 80
0
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0
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2.6k
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Comment: C: different results between Rsamtools::pileup and samtools depth
8.5 years ago TimothéeFlutre ▴ 80
0
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0
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1.5k
views
Comment: C: mRNA start used instead of gene start in makeTxDbFromGFF
8.6 years ago TimothéeFlutre ▴ 80
1
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0
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1.5k
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Comment: C: distinguish DataSource from Provider and ProviderVersion in makeTxDbPackage
8.6 years ago TimothéeFlutre ▴ 80
1
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2
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1.5k
views
mRNA start used instead of gene start in makeTxDbFromGFF
maketxdbfromgff genomicfeatures
updated 8.6 years ago by 16k • written 8.6 years ago by ▴ 80
4
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2
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1.5k
views
distinguish DataSource from Provider and ProviderVersion in makeTxDbPackage
genomicfeatures txdb maketxdbfromgff metadata
updated 8.6 years ago by ★ 6.8k • written 8.6 years ago by ▴ 80
0
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0
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1.9k
views
Comment: C: makeTxDbFromGFF returns empty object
8.6 years ago TimothéeFlutre ▴ 80
0
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1
reply
1.9k
views
Comment: C: makeTxDbFromGFF returns empty object
8.6 years ago TimothéeFlutre ▴ 80
0
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5
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1.9k
views
makeTxDbFromGFF returns empty object
genomicfeatures txdb maketxdbfromgff
8.6 years ago TimothéeFlutre ▴ 80
0
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0
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13k
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Comment: C: makeTxDbFromBiomart Error: 1: Space required after the Public Identifier
8.6 years ago TimothéeFlutre ▴ 80
2
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1
reply
1.7k
views
export BSgenome directly in gzipped fasta
bsgenome gzip fasta
updated 8.6 years ago by ▴ 90 • written 8.6 years ago by ▴ 80
1
vote
0
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1.8k
views
Answer: A: Write the "map" DataFrame from genotypeToSnpMatrix() to a text file
9.0 years ago TimothéeFlutre ▴ 80
1
vote
1
reply
1.8k
views
Write the "map" DataFrame from genotypeToSnpMatrix() to a text file
variantannotation DataFrame snpstats
9.0 years ago TimothéeFlutre ▴ 80
0
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0
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1.9k
views
Answer: A: scanBam with ScanBamParam argument which specified ignores yieldSize. Intentiona
9.0 years ago TimothéeFlutre ▴ 80
2
votes
3
replies
1.4k
views
genotypeToSnpMatrix doesn't handle PL
variantannotation vcf
updated 9.0 years ago by ▴ 870 • written 9.1 years ago by ▴ 80
1
vote
1
reply
1.1k
views
inconsistent default of file suffix
variantannotation rsamtools
updated 9.1 years ago by ★ 6.8k • written 9.1 years ago by ▴ 80
0
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0
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2.0k
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Comment: C: problem with @ranges@start in DNAStringSet
9.1 years ago TimothéeFlutre ▴ 80
0
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0
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2.0k
views
Comment: C: problem with @ranges@start in DNAStringSet
9.1 years ago TimothéeFlutre ▴ 80
3
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8
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2.0k
views
problem with @ranges@start in DNAStringSet
vcf testthat dnastringset
9.1 years ago TimothéeFlutre ▴ 80
0
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1
reply
2.0k
views
Comment: C: problem with @ranges@start in DNAStringSet
9.1 years ago TimothéeFlutre ▴ 80
0
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0
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2.0k
views
Comment: C: problem with @ranges@start in DNAStringSet
9.1 years ago TimothéeFlutre ▴ 80
2
votes
1
reply
1.3k
views
Error in extractROWS(x, eval(filter, x))
variantannotation filtervcf
updated 9.1 years ago by ★ 11k • written 9.1 years ago by ▴ 80
0
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1
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3.1k
views
Comment: C: append to bgzipped VCF file
9.1 years ago TimothéeFlutre ▴ 80
0
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1
reply
3.1k
views
Comment: C: append to bgzipped VCF file
9.1 years ago TimothéeFlutre ▴ 80
0
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0
replies
1.4k
views
Comment: C: Error: could not find function "PartitioningByEnd"
9.1 years ago TimothéeFlutre ▴ 80
1
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2
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1.4k
views
Error: could not find function "PartitioningByEnd"
variantannotation iranges
updated 9.1 years ago by ★ 11k • written 9.1 years ago by ▴ 80
0
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1
reply
3.1k
views
Comment: C: append to bgzipped VCF file
9.1 years ago TimothéeFlutre ▴ 80
0
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7
replies
3.1k
views
append to bgzipped VCF file
variantannotation tabix
updated 9.1 years ago by ★ 11k • written 9.1 years ago by ▴ 80
0
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0
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1.4k
views
Comment: C: genotypeToSnpMatrix doesn't handle PL
9.1 years ago TimothéeFlutre ▴ 80
0
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0
replies
1.5k
views
Comment: C: a filter works alone but not with other filters
9.1 years ago TimothéeFlutre ▴ 80
2
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2
replies
1.5k
views
a filter works alone but not with other filters
variantannotation vcf filtervcf
updated 9.1 years ago by 25k • written 9.1 years ago by ▴ 80
0
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0
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1.3k
views
Comment: C: filter "isSnp" for VCF
9.1 years ago TimothéeFlutre ▴ 80
5
votes
2
replies
1.3k
views
filter "isSnp" for VCF
variantannotation filtervcf vcf
updated 9.1 years ago by ★ 11k • written 9.1 years ago by ▴ 80
3
votes
3
replies
1.4k
views
error in report(qa) from pkg ShortRead
updated 10.2 years ago by 25k • written 10.2 years ago by ▴ 80
0
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0
replies
1.4k
views
Comment: C: error in report(qa) from pkg ShortRead
10.2 years ago TimothéeFlutre ▴ 80
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