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4
votes
4
replies
1.8k
views
Replicating GO website analysis with bioconductor packages (topGO?)
topGO Gene Ontology enrichment panther.db
updated 4.6 years ago by 52k • written 4.6 years ago by ▴ 120
0
votes
1
reply
1.3k
views
package circlize: How to extend circos plot?
circlize circos
4.8 years ago Brian Smith ▴ 120
0
votes
0
replies
2.8k
views
Comment: C: TxDb, GenomicFeatures load from GTF file (Mmul_8)
4.8 years ago Brian Smith ▴ 120
0
votes
0
replies
2.8k
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Comment: C: TxDb, GenomicFeatures load from GTF file (Mmul_8)
4.8 years ago Brian Smith ▴ 120
0
votes
1
reply
2.8k
views
Comment: C: TxDb, GenomicFeatures load from GTF file (Mmul_8)
4.8 years ago Brian Smith ▴ 120
3
votes
6
replies
2.8k
views
TxDb, GenomicFeatures load from GTF file (Mmul_8)
TxDb GenomicFeatures
updated 4.8 years ago by 25k • written 4.8 years ago by ▴ 120
0
votes
1
reply
525
views
DESeq2: basemean count
deseq2
updated 5.2 years ago by 43k • written 5.2 years ago by ▴ 120
0
votes
0
replies
2.7k
views
Comment: C: DESeq2 namespace load failed for GenomeInfoDb
5.3 years ago Brian Smith ▴ 120
0
votes
1
reply
2.7k
views
Comment: C: DESeq2 namespace load failed for GenomeInfoDb
5.3 years ago Brian Smith ▴ 120
0
votes
1
reply
2.7k
views
Comment: C: DESeq2 namespace load failed for GenomeInfoDb
5.3 years ago Brian Smith ▴ 120
1
vote
7
replies
2.7k
views
DESeq2 namespace load failed for GenomeInfoDb
DESeq2
5.3 years ago Brian Smith ▴ 120
0
votes
1
reply
1.3k
views
TxDb basic question
txdb TxDb.Mmulatta.UCSC.rheMac8.refGene
updated 6.8 years ago by ▴ 50 • written 6.8 years ago by ▴ 120
0
votes
0
replies
1.0k
views
Comment: C: Biostrings: "Error in .normargSEW(start, "start")"
6.8 years ago Brian Smith ▴ 120
2
votes
2
replies
1.0k
views
Biostrings: "Error in .normargSEW(start, "start")"
Biostrings
updated 6.8 years ago by 25k • written 6.8 years ago by ▴ 120
1
vote
1
reply
1.2k
views
genes in rhesus genome (ref. TxDb.Mmulatta.UCSC.rheMac8.refGene)
org.hs.eg.db org.mmu.eg.db
updated 7.0 years ago by 68k • written 7.0 years ago by ▴ 120
1
vote
0
replies
2.1k
views
Comment: C: RNA-Seq : zero counts
7.4 years ago Brian Smith ▴ 120
0
votes
0
replies
2.1k
views
Comment: C: RNA-Seq : zero counts
7.4 years ago Brian Smith ▴ 120
0
votes
1
reply
2.1k
views
Comment: C: RNA-Seq : zero counts
7.4 years ago Brian Smith ▴ 120
4
votes
6
replies
2.1k
views
RNA-Seq : zero counts
rnaseq bioconductor
updated 7.4 years ago by 68k • written 7.4 years ago by ▴ 120
0
votes
1
reply
2.0k
views
Epigenetic clock (Horvath): package?
methylation illimina 450k methylation epigenetics minfi
updated 8.1 years ago by ▴ 60 • written 8.2 years ago by ▴ 120
0
votes
0
replies
1.7k
views
Answer: A: SAM/siggenes: Differential gene expression analysis
8.2 years ago Brian Smith ▴ 120
2
votes
2
replies
1.7k
views
SAM/siggenes: Differential gene expression analysis
SAM siggenes microarray gene expression sam
8.2 years ago Brian Smith ▴ 120
0
votes
2
replies
1.8k
views
metagenomeSeq: cumNormStat normalization default
metagenomeseq microbiome
8.4 years ago Brian Smith ▴ 120
0
votes
0
replies
1.8k
views
Answer: A: metagenomeSeq: cumNormStat normalization default
8.4 years ago Brian Smith ▴ 120
0
votes
0
replies
4.9k
views
Comment: C: Gviz issue: crashing when AnnotationTrack( ... , just.group="above")
8.7 years ago Brian Smith ▴ 120
0
votes
1
reply
4.9k
views
Comment: C: Gviz issue: crashing when AnnotationTrack( ... , just.group="above")
8.7 years ago Brian Smith ▴ 120
0
votes
1
reply
4.9k
views
Answer: A: Gviz issue: crashing when AnnotationTrack( ... , just.group="above")
8.7 years ago Brian Smith ▴ 120
0
votes
4
replies
4.7k
views
org.Hs.eg.db - hg38 build?
org.hs.eg.db
updated 8.8 years ago by ▴ 180 • written 8.8 years ago by ▴ 120
0
votes
0
replies
2.1k
views
illumina methylationEPIC 850k array
illumina methylationEPIC 450k
9.2 years ago Brian Smith ▴ 120
1
vote
2
replies
1.9k
views
minfi: error with estimateCellCounts
minfi
9.4 years ago Brian Smith ▴ 120
0
votes
0
replies
1.9k
views
Answer: A: minfi: error with estimateCellCounts
9.4 years ago Brian Smith ▴ 120
0
votes
0
replies
1.3k
views
ChAMP: champ.runCombat error
ChAMP
9.4 years ago Brian Smith ▴ 120
0
votes
1
reply
3.9k
views
DESeq2: too many NA for pvalues?
deseq2 deseq
updated 9.4 years ago by 43k • written 9.4 years ago by ▴ 120
0
votes
1
reply
1.7k
views
RnBeads - test statistics for rnb.run.differential
RnBeads
updated 9.4 years ago by • 0 • written 9.4 years ago by ▴ 120
0
votes
1
reply
1.6k
views
phyloseq - plot_bar() error
phyloseq plot_bar()
updated 9.4 years ago by ▴ 20 • written 9.4 years ago by ▴ 120
1
vote
1
reply
1.4k
views
metagenomeSeq - normFactors
metagenomeseq
updated 9.4 years ago by ▴ 280 • written 9.4 years ago by ▴ 120
0
votes
0
replies
2.1k
views
Answer: A: RnBeads - error with 'rnb.run.differential' module
9.4 years ago Brian Smith ▴ 120
0
votes
2
replies
2.1k
views
RnBeads - error with 'rnb.run.differential' module
RnBeads illimina 450k methylation
9.4 years ago Brian Smith ▴ 120
0
votes
0
replies
1.3k
views
refFreeEWAS - extract beta values
reffreeEWAS
9.5 years ago Brian Smith ▴ 120
1
vote
1
reply
2.0k
views
RnBeads - doesn't produce pdfs
rnbeads illumina450k
updated 9.5 years ago by ▴ 10 • written 9.5 years ago by ▴ 120
0
votes
0
replies
2.8k
views
Comment: C: IlluminaHumanMethylation450k.db - error on trying to insall
9.5 years ago Brian Smith ▴ 120
0
votes
1
reply
2.8k
views
Answer: A: IlluminaHumanMethylation450k.db - error on trying to insall
9.5 years ago Brian Smith ▴ 120
0
votes
4
replies
2.8k
views
IlluminaHumanMethylation450k.db - error on trying to insall
IlluminaHumanMethylation450k.db
9.5 years ago Brian Smith ▴ 120
5
votes
2
replies
6.1k
views
org.Hs.eg.db - convert ALIAS to ENTREZID, GENENAME
org.hs.eg.db select
9.6 years ago Brian Smith ▴ 120
1
vote
0
replies
6.1k
views
Answer: A: org.Hs.eg.db - convert ALIAS to ENTREZID, GENENAME
9.6 years ago Brian Smith ▴ 120
0
votes
3
replies
3.6k
views
DMRcate: incorporating covariates to find DMRs in methylation data?
limma illimina 450k methylation DMRcate
updated 10.0 years ago by ▴ 230 • written 10.0 years ago by ▴ 120
0
votes
1
reply
2.0k
views
illumina 450k methylation: Cell composition for saliva
methylation minfi illuminahumanmethylation450k.db saliva cell composition
updated 10.0 years ago by ★ 6.5k • written 10.0 years ago by ▴ 120
0
votes
0
replies
2.3k
views
Answer: A: topGO: genes annotated to a significant GO term
10.2 years ago Brian Smith ▴ 120
0
votes
1
reply
2.3k
views
topGO: genes annotated to a significant GO term
topGO
10.2 years ago Brian Smith ▴ 120
0
votes
1
reply
5.5k
views
topGO: How to create gene2GO annotation for mouse?
topgo
updated 10.2 years ago by ▴ 610 • written 10.2 years ago by ▴ 120
66 results • Page 1 of 2
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