Showing : RnBeads • reset
0
votes
3
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972
views
Batch correction using control probes in EPIC array data
RnBeads minfiData minfi EPICarray
updated 12 months ago by ▴ 780 • written 12 months ago by ▴ 10
0
votes
0
replies
436
views
rnbeads inference
epigenetics RnBeads
15 months ago Jitendra ▴ 10
0
votes
0
replies
575
views
normalisation options in RnBeads
Epigenetics RnBeads R Bioconducter
2.1 years ago Jitendra ▴ 10
0
votes
0
replies
737
views
filtering options in RnBeads for array data
Epigenetics RnBeads MethylationArrayData methylationArrayAnalysis
2.1 years ago Jitendra ▴ 10
0
votes
8
replies
1.9k
views
error in RnBeads installation
Epigenetics RnBeads R
2.2 years ago Jitendra ▴ 10
1
vote
1
reply
865
views
How to export methylation tracks in bed format
RnBeads
updated 3.2 years ago by 65k • written 3.2 years ago by ▴ 10
0
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0
replies
827
views
How to know the number of detected CpG islands with RnBeads
RnBeads
3.2 years ago Federica ▴ 10
0
votes
0
replies
1.0k
views
How to get illumina CpG IDs by gene name?
MethylationArrayData RnBeads
3.2 years ago D ▴ 10
1
vote
2
replies
1.6k
views
How to install Ghostscript in windows?
RnBeads.hg19 RnBeads
written 3.2 years ago by ▴ 10
2
votes
4
replies
1.3k
views
How to launch the RnBeads Data Juggler?
RnBeads
3.2 years ago Federica ▴ 10
2
votes
9
replies
1.9k
views
Installation of RnBeads package fails on Ubuntu 18.04.5 LTS
RnBeads
updated 2.6 years ago by • 0 • written 3.5 years ago by • 0
2
votes
3
replies
1.1k
views
RnBeads::combine() - error?
RnBeads Rnbeads2.0 RnBeads2
updated 3.1 years ago by ▴ 50 • written 3.9 years ago by ▴ 10
0
votes
0
replies
804
views
Is rnb.execute.import() has a bug in reading bismarkCytosine formart bed file? coordinates seem to be shifted by 1
RnBeads
4.1 years ago caoy4g4 • 0
0
votes
2
replies
1.9k
views
RnBeads set ghost script environment variable
RnBeads ghostscript
4.5 years ago Kathrin.Klee • 0
1
vote
3
replies
1.2k
views
Obtaining annotated results from rnbeads
rnbeads EPIC
updated 4.9 years ago by ▴ 50 • written 4.9 years ago by ★ 1.1k
0
votes
3
replies
1.1k
views
Trouble creating an RnBeads annotation for rn6 rat genome build
RnBeads rn6 RnBeadsAnnotationCreator
updated 5.3 years ago by ▴ 50 • written 5.3 years ago by • 0
0
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1
reply
1.1k
views
RnBeads "The analysis directory does not contain RnBSet objects"
rnbeads
6.0 years ago neuro3030 • 0
0
votes
1
reply
1.4k
views
RnBeads data preprocessing error
RnBeads
updated 6.2 years ago by • 0 • written 6.6 years ago by • 0
0
votes
0
replies
1.0k
views
differential methylation analysis with RnBeads
rnbeads methylation methylationepic dna methylation
6.2 years ago gabrielrfries • 0
1
vote
1
reply
1.5k
views
Error in Rnbeads:Error in logger.error(em) : Could not create file. cannot popen '/usr/bin/which 'gs' 2>/dev/null', probable reason 'Cannot alloca…
R bioconductor rnbeads microarray illimina 450k methylation
6.5 years ago preethibagopi28 ▴ 10
0
votes
0
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1.1k
views
Is it possible to use Rnbeads with WGBS data from epigenetics roadmap/ucsc data
rnbeads wgbs
6.7 years ago Theo ▴ 10
0
votes
2
replies
2.2k
views
how to do noob+funnorm+bmiq normalization together in minfi or RnBeads?
minfi RnBeads noob preprocessFunnorm BMIQ
updated 7.1 years ago by ★ 6.5k • written 7.1 years ago by ▴ 10
0
votes
0
replies
1.0k
views
'type = genes' for RnBeads::meth() function
rnbeads
7.3 years ago Tom ▴ 10
0
votes
0
replies
1.3k
views
Importing Infinium data files using RnBeads::rnb.execute.import()
RnBeads
7.4 years ago Habil Zare ▴ 200
0
votes
0
replies
1.0k
views
RnBeads, enrichment analysis
rnbeads
7.6 years ago gaiusjaugustus • 0
0
votes
0
replies
1.5k
views
Issue with finding .idat files when analysing illumina methylation microarrays using RnBeads
rnbeads methylation illumina epic microarray
7.7 years ago rasii • 0
4
votes
4
replies
3.0k
views
How to remove unwanted probes before normalization in 450k data
minfi 450k champ rnbeads
updated 8.1 years ago by 65k • written 8.2 years ago by ▴ 60
0
votes
2
replies
2.3k
views
error nonzero exit
illuminahumanmethylation450k.db rnbeads
updated 8.3 years ago by • 0 • written 8.7 years ago by • 0
0
votes
2
replies
1.3k
views
RnBeads - save state between data crunching and report generation checkpoints within the differential methylation module?
rnbeads xserver headless-r x11
8.3 years ago areyoujokingme • 0
0
votes
0
replies
2.2k
views
RnBeads check.names error:: "formal argument "check.names" matched by multiple actual arguments"
rnbeads software error
8.4 years ago areyoujokingme • 0
2
votes
7
replies
2.1k
views
ggbio, RnBeads and 3.2.2
ggbio rnbeads rversion3.2.2
8.4 years ago areyoujokingme • 0
0
votes
1
reply
1.5k
views
RnBeads - test statistics for rnb.run.differential
RnBeads
updated 8.5 years ago by • 0 • written 8.5 years ago by ▴ 120
0
votes
1
reply
1.2k
views
RnBeads and technical replicates in differential analysis
rnbeads replicates
updated 8.5 years ago by • 0 • written 8.5 years ago by ▴ 40
0
votes
2
replies
1.9k
views
RnBeads - error with 'rnb.run.differential' module
RnBeads illimina 450k methylation
8.5 years ago Brian Smith ▴ 120
1
vote
9
replies
2.2k
views
RnBeads fails with error in version 1.2 with GRanges v1.22.0
RnBeads
updated 8.5 years ago by • 0 • written 8.6 years ago by • 0
1
vote
1
reply
1.7k
views
RnBeads - doesn't produce pdfs
rnbeads illumina450k
updated 8.6 years ago by ▴ 10 • written 8.6 years ago by ▴ 120
0
votes
2
replies
1.7k
views
rnBeads error for the report path
software error rnbeads
updated 8.6 years ago by ★ 8.2k • written 8.6 years ago by • 0
0
votes
1
reply
1.8k
views
RnBeads: Error in as.list.default(data.source) : no method for coercing this S4 class to a vector
rnbeads error as.vector(data) s4vectors s4
8.7 years ago schasse • 0
0
votes
3
replies
3.0k
views
RnBeads cannot locate libjasper.so.1
rnbeads gs ghostscript shared libraries cluster
8.8 years ago bmreilly • 0
2
votes
4
replies
2.4k
views
Package RnBeads not available for R 3.1.2?
RnBeads packages R 3.1.2
8.8 years ago bmreilly • 0
40 results • Page 1 of 1
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Comment: Ensembl plants at annotationHub? by Daniele • 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0
Thanks a lot!
Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150
Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by Matthew Thornton ▴ 360
So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!
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Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
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