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panther.db
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Can i retrieve domain information from PANTHER ID's using PANTHER.db ?
PANTHER.db
11 weeks ago
nromerov
• 0
4
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4
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1.3k
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Replicating GO website analysis with bioconductor packages (topGO?)
topGO
Gene Ontology
enrichment
panther.db
updated 3.7 years ago by
Gordon Smyth
51k • written 3.7 years ago by
Brian Smith
▴ 120
0
votes
1
reply
1.2k
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PANTHER.db update to the last version of PANTHERdb database?
PANTHER.db
update
annotation
go
updated 5.4 years ago by
Martin Morgan
25k • written 5.4 years ago by
alfonsosaera
• 0
3 results • Page
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Answer: Behaviour of featureCounts when quantifying multi-mapping reads
by
Yang Liao
▴ 400
Both `v1.5.0` and `v1.6.4` versions are very old. I suggest upgrading to `v2.0.6` (the latest version). There was a change regarding the `…
Comment: Error: no such table: main.gene2pubmed when running makeOrgPackageFromNCBI() fr
by
Ozan
• 0
Sounds good. Thanks again!
Comment: Error: no such table: main.gene2pubmed when running makeOrgPackageFromNCBI() fr
by
James W. MacDonald
66k
Ah, ok. Doesn't really matter though. Try using `UniProt.ws`.
Comment: Error: no such table: main.gene2pubmed when running makeOrgPackageFromNCBI() fr
by
Ozan
• 0
I believe my `NCBI.sqlite` database is located in the same directory, but for some reason it seems to be empty. Even in the File explorer i…
Comment: Error: no such table: main.gene2pubmed when running makeOrgPackageFromNCBI() fr
by
James W. MacDonald
66k
You have to do that in the directory that contains your NCBI.sqlite database. ``` > library(RSQLite) > con <- dbConnect(SQLite(), "thisfil…
Votes
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Comment: Error: no such table: main.gene2pubmed when running makeOrgPackageFromNCBI() fr
Comment: Error: no such table: main.gene2pubmed when running makeOrgPackageFromNCBI() fr
Comment: Error: no such table: main.gene2pubmed when running makeOrgPackageFromNCBI() fr
Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
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