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86
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Comment: Comment: Assymetric MA plot with no overall trend
1 day ago Michael Love 42k
1
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1
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210
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Answer: Answer: Can DESeq2 rlog normalized matrix reflects time course result directly?
1 day ago Michael Love 42k
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0
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457
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Comment: Comment: Can I trust the differential expression analysis when the two groups overlap on
2 days ago Michael Love 42k
0
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1
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86
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Answer: Answer: Assymetric MA plot with no overall trend
2 days ago Michael Love 42k
0
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1
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457
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Comment: Comment: Can I trust the differential expression analysis when the two groups overlap on
2 days ago Michael Love 42k
1
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1
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150
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Comment: Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
2 days ago Michael Love 42k
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0
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73
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Answer: Answer: normalization across different species for DESeq2 analysis
2 days ago Michael Love 42k
0
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0
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3.1k
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
2 days ago Michael Love 42k
0
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1
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457
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Answer: Answer: Can I trust the differential expression analysis when the two groups overlap on
3 days ago Michael Love 42k
0
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1
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3.1k
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
3 days ago Michael Love 42k
0
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1
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3.1k
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
6 days ago Michael Love 42k
0
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1
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3.1k
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
7 days ago Michael Love 42k
0
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0
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3.1k
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
7 days ago Michael Love 42k
0
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1
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3.1k
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
8 days ago Michael Love 42k
0
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1
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3.1k
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
10 days ago Michael Love 42k
0
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1
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3.1k
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
10 days ago Michael Love 42k
3
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0
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142
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Answer: Answer: How to save the DEXSeq results
10 days ago Michael Love 42k
2
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0
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139
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Answer: Answer: Trim/Filter out-of-bounds GRanges
10 days ago Michael Love 42k
0
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0
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215
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Comment: Comment: Couldn't connect to server while using "pathways"
10 days ago Michael Love 42k
0
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1
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3.1k
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
11 days ago Michael Love 42k
0
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1
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3.1k
views
Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
11 days ago Michael Love 42k
0
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0
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184
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Answer: Answer: Handling multiple differential expression comparisons
11 days ago Michael Love 42k
1
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0
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251
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Comment: Comment: Too many significant genes when integrating gtex and tcga
13 days ago Michael Love 42k
0
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0
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156
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Answer: Answer: DESeq2 v1.35.0
14 days ago Michael Love 42k
0
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0
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298
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Comment: Comment: log2FoldChange value is way too different when compared with counts(dds)
15 days ago Michael Love 42k
0
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1
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298
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Answer: Answer: log2FoldChange value is way too different when compared with counts(dds)
15 days ago Michael Love 42k
0
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1
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2.5k
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Comment: Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
16 days ago Michael Love 42k
1
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0
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150
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Answer: Answer: Fold change calculation in Diffbind vs. DESEQ2?
16 days ago Michael Love 42k
0
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1
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164
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Answer: Answer: Timecourse RNASeq analysis
16 days ago Michael Love 42k
0
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0
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135
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Answer: Answer: Padj "NA" with thousands of low count although the raw read counts are quite lar
16 days ago Michael Love 42k
0
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0
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225
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Answer: Answer: PCA plot suggestions
20 days ago Michael Love 42k
0
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0
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250
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Answer: Answer: Deseq2. decontXcounts not integers. Useful alternative?
20 days ago Michael Love 42k
0
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0
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165
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Answer: Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
22 days ago Michael Love 42k
1
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0
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234
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Comment: Comment: Different Shrunk Log2FC according with reference
22 days ago Michael Love 42k
2
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0
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328
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Answer: Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
23 days ago Michael Love 42k
0
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1
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2.5k
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Comment: Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
23 days ago Michael Love 42k
1
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0
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249
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Comment: Comment: DESeq2 - dispersion estimation when there is none
23 days ago Michael Love 42k
2
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1
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249
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Answer: Answer: DESeq2 - dispersion estimation when there is none
24 days ago Michael Love 42k
0
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0
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444
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Comment: Comment: DESeq filtering specific to contrasts
27 days ago Michael Love 42k
0
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0
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788
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Comment: Comment: DESeq2 setting significant p-value
27 days ago Michael Love 42k
0
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1
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444
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Comment: Comment: DESeq filtering specific to contrasts
27 days ago Michael Love 42k
0
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1
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1.7k
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Comment: Comment: Which input file is used for DGEList in EgdeR?
27 days ago Michael Love 42k
0
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1
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2.5k
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Comment: Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
27 days ago Michael Love 42k
0
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0
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291
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Comment: Comment: DEG with low counts
27 days ago Michael Love 42k
0
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1
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444
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Comment: Comment: DESeq filtering specific to contrasts
27 days ago Michael Love 42k
0
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0
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153
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Answer: Answer: rlog transformation
28 days ago Michael Love 42k
0
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0
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124
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Answer: Answer: ONT long-read RNA sequencing - data analysis options
28 days ago Michael Love 42k
0
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1
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737
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Answer: Answer: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
28 days ago Michael Love 42k
0
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0
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149
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Answer: Answer: covariate with negative and positive values
28 days ago Michael Love 42k
0
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1
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788
views
Comment: Comment: DESeq2 setting significant p-value
28 days ago Michael Love 42k
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