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1.0k
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Variant Filtering on very large VCF files
VariantAnnotation VariantFiltering
18 months ago Bogdan ▴ 670
0
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0
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1.1k
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conversion a VCF file into a MAF file
VCFArray maftools
20 months ago Bogdan ▴ 670
0
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2
replies
1.8k
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about baseMean in DEseq2
DESeq2
written 3.7 years ago by ▴ 670
0
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1
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801
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BioC packages in cancer genomics
genomics cancer
updated 2.1 years ago by ★ 4.0k • written 2.1 years ago by ▴ 670
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1
reply
894
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GRanges list convert into igraph format
GRanges igraph
updated 2.2 years ago by ▴ 760 • written 2.2 years ago by ▴ 670
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0
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673
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normFactors or calcNormFactors (computing the normalization or scaling factors)
limma edgeR csaw
2.3 years ago Bogdan ▴ 670
0
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0
replies
701
views
RUVg for SNAP-ChIP ?
RUVSeq
2.4 years ago Bogdan ▴ 670
0
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1
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3.3k
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Comment: Comment: normalization of ChIP-seq data by using the spike-ins or by using total library
2.4 years ago Bogdan ▴ 670
0
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1
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3.3k
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Comment: Comment: normalization of ChIP-seq data by using the spike-ins or by using total library
2.4 years ago Bogdan ▴ 670
0
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2
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3.3k
views
Comment: Comment: normalization of ChIP-seq data by using the spike-ins or by using total library
2.4 years ago Bogdan ▴ 670
0
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0
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4.2k
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Comment: Comment: Spike-in normalization in EdgeR
2.4 years ago Bogdan ▴ 670
0
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0
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5.3k
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Comment: Comment: Using edgeR and a spike-in to calculate absolute abundance
2.4 years ago Bogdan ▴ 670
0
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1
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3.3k
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Comment: Comment: normalization of ChIP-seq data by using the spike-ins or by using total library
2.4 years ago Bogdan ▴ 670
0
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1
reply
3.3k
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Comment: Comment: normalization of ChIP-seq data by using the spike-ins or by using total library
2.4 years ago Bogdan ▴ 670
0
votes
1
reply
3.3k
views
Comment: Comment: normalization of ChIP-seq data by using the spike-ins or by using total library
2.4 years ago Bogdan ▴ 670
1
vote
12
replies
3.3k
views
normalization of ChIP-seq data by using the spike-ins or by using total library sizes
DESeq2 edgeR limma
updated 2.4 years ago by 43k • written 2.4 years ago by ▴ 670
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0
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3.3k
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Comment: Comment: normalization of ChIP-seq data by using the spike-ins or by using total library
2.4 years ago Bogdan ▴ 670
0
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0
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1.4k
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Comment: Comment: DiffBind and peak counts as input
2.5 years ago Bogdan ▴ 670
2
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4
replies
1.4k
views
DiffBind and peak counts as input
DESeq2 edgeR DiffBind
updated 2.4 years ago by ★ 5.2k • written 2.5 years ago by ▴ 670
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0
replies
1.4k
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Comment: Comment: statistics : edger or DESeq2 to asses the differential binding using the averag
2.5 years ago Bogdan ▴ 670
0
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1
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1.4k
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Comment: Comment: statistics : edger or DESeq2 to asses the differential binding using the averag
2.5 years ago Bogdan ▴ 670
0
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1
reply
1.4k
views
Comment: Comment: statistics : edger or DESeq2 to asses the differential binding using the averag
2.5 years ago Bogdan ▴ 670
1
vote
7
replies
1.4k
views
statistics : edger or DESeq2 to asses the differential binding using the average scores
DESeq2 edgeR
updated 2.3 years ago by • 0 • written 2.5 years ago by ▴ 670
3
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9
replies
2.0k
views
scDblFinder and xgboost
scDblFinder xgboost
written 3.0 years ago by ▴ 670
1
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0
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3.1k
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Comment: Comment: installation of BioC packages on Mac M1 Monterrey OS
2.5 years ago Bogdan ▴ 670
0
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3
replies
2.1k
views
ShortRead Installation in R 4.2.0 and zlib library
R-4 ShortRead
2.5 years ago Bogdan ▴ 670
0
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0
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2.1k
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Comment: Comment: ShortRead Installation in R 4.2.0 and zlib library
2.5 years ago Bogdan ▴ 670
0
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0
replies
2.2k
views
Answer: Answer: bigwig to counts
2.5 years ago • updated 2.2 years ago Bogdan ▴ 670
1
vote
1
reply
3.1k
views
installation of BioC packages on Mac M1 Monterrey OS
limma Bioconductor edgeR
2.5 years ago Bogdan ▴ 670
0
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1
reply
2.2k
views
bigwig to counts
DESeq2 edgeR bigwig limma
2.5 years ago • updated 2.2 years ago Bogdan ▴ 670
0
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2
replies
2.5k
views
converting bedgraph into bigwig
bedgraph wiggleplotr bigwig wig
updated 2.6 years ago by • 0 • written 2.6 years ago by ▴ 670
0
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1
reply
2.3k
views
Comment: Comment: performing the differential binding in ChIP-seq
2.9 years ago Bogdan ▴ 670
0
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0
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2.3k
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Comment: Comment: performing the differential binding in ChIP-seq
2.9 years ago Bogdan ▴ 670
0
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6
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2.3k
views
performing the differential binding in ChIP-seq
ChIP-seq
updated 2.0 years ago by • 0 • written 2.9 years ago by ▴ 670
0
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1
reply
1.8k
views
Comment: Comment: scDblFinder and amulet
2.9 years ago Bogdan ▴ 670
0
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1
reply
1.8k
views
Comment: Comment: scDblFinder and amulet
2.9 years ago Bogdan ▴ 670
0
votes
6
replies
1.8k
views
scDblFinder and amulet
scDblFinder
updated 2.9 years ago by • 0 • written 2.9 years ago by ▴ 670
0
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1
reply
3.2k
views
Comment: Comment: reading hdf5 files without hdf5r
3.0 years ago Bogdan ▴ 670
3
votes
5
replies
3.2k
views
reading hdf5 files without hdf5r
hdf5r
updated 3.0 years ago by 16k • written 3.0 years ago by ▴ 670
0
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0
replies
3.2k
views
Comment: Comment: reading hdf5 files without hdf5r
3.0 years ago Bogdan ▴ 670
0
votes
1
reply
768
views
download
BSgenome.Hsapiens.UCSC.hg38 BSgenome.Hsapiens.UCSC.hg38.masked
3.0 years ago Bogdan ▴ 670
0
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0
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768
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Answer: Answer: download
3.0 years ago Bogdan ▴ 670
0
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0
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1.1k
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Comment: Comment: scATAC-seq median fragments per cell
3.0 years ago Bogdan ▴ 670
0
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1
reply
1.1k
views
scATAC-seq median fragments per cell
SnapATAC Signac ArchR scATAC-seq
3.1 years ago • updated 3.0 years ago Bogdan ▴ 670
1
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1
reply
1.7k
views
installing the packages such as BSgenome.Hsapiens.UCSC.hg19
BSgenome.Hsapiens.UCSC.hg19
updated 3.1 years ago by 16k • written 3.1 years ago by ▴ 670
0
votes
1
reply
1.2k
views
peak annotation
ChIPpeakAnno Annotation
updated 3.0 years ago by ▴ 70 • written 3.1 years ago by ▴ 670
1
vote
2
replies
2.0k
views
Gviz and datatracks
Gviz
updated 3.1 years ago by • 0 • written 3.2 years ago by ▴ 670
0
votes
1
reply
1.1k
views
meta-gene profiles
ChIP-seq
updated 3.1 years ago by ▴ 60 • written 3.1 years ago by ▴ 670
0
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1
reply
1.2k
views
saving png images and X11
ChipQC
updated 3.1 years ago by ★ 4.8k • written 3.1 years ago by ▴ 670
0
votes
0
replies
1.3k
views
Comment: Comment: ChIP-seq or CUT&RUN enrichment
3.2 years ago Bogdan ▴ 670
429 results • Page 1 of 9
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