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0
votes
0
replies
1.2k
views
Comment:
Comment: Normalizing exonic reads and then log transforming or variance stabilising
2.9 years ago
A
▴ 40
1
vote
2
replies
1.2k
views
Normalizing exonic reads and then log transforming or variance stabilising
DEXSeq
3.1 years ago • updated 2.9 years ago
A
▴ 40
0
votes
0
replies
1.9k
views
Comment:
Comment: Can VST be run without runing DESeq or estimateSizeFactors
3.3 years ago
A
▴ 40
1
vote
3
replies
1.9k
views
Can VST be run without runing DESeq or estimateSizeFactors
DESeq2
3.3 years ago
A
▴ 40
0
votes
2
replies
1.7k
views
Comment:
Comment: Variance stabilising transformation to within given range
3.9 years ago
A
▴ 40
0
votes
1
reply
1.7k
views
Comment:
Comment: Variance stabilising transformation to within given range
3.9 years ago
A
▴ 40
0
votes
0
replies
1.7k
views
Comment:
Comment: Variance stabilising transformation to within given range
3.9 years ago
A
▴ 40
0
votes
1
reply
1.7k
views
Comment:
Comment: Variance stabilising transformation to within given range
3.9 years ago
A
▴ 40
4
votes
9
replies
1.7k
views
Variance stabilising transformation to within given range
DESeq2
scaling
vst
updated 3.9 years ago by
Wolfgang Huber
★ 13k • written 3.9 years ago by
A
▴ 40
0
votes
0
replies
1.2k
views
Comment:
C: technical replicates and normalization/log transformation
4.3 years ago
A
▴ 40
0
votes
1
reply
1.2k
views
Comment:
C: technical replicates and normalization/log transformation
4.3 years ago
A
▴ 40
1
vote
5
replies
1.2k
views
technical replicates and normalization/log transformation
deseq2
normalization
updated 4.3 years ago by
Michael Love
43k • written 4.3 years ago by
A
▴ 40
1
vote
1
reply
597
views
A question for clarification regarding counts input to DESeqDataSetFromMatrix
deseq2
updated 4.5 years ago by
Michael Love
43k • written 4.5 years ago by
A
▴ 40
0
votes
0
replies
1.8k
views
Comment:
C: subsetting VST counts from one dataset
4.7 years ago
A
▴ 40
2
votes
2
replies
1.8k
views
subsetting VST counts from one dataset
deseq2
rna-seq
updated 4.7 years ago by
Michael Love
43k • written 4.7 years ago by
A
▴ 40
0
votes
0
replies
899
views
Error when trying to read in idat files in methylumi
methylumi
450k
methylation
methylome
5.0 years ago
A
▴ 40
0
votes
0
replies
2.4k
views
Comment:
C: Batch effects between different sequencing runs
5.2 years ago
A
▴ 40
0
votes
6
replies
2.4k
views
Batch effects between different sequencing runs
deseq2
batchcorrection
updated 5.3 years ago by
swbarnes2
★ 1.4k • written 5.3 years ago by
A
▴ 40
0
votes
0
replies
2.4k
views
Comment:
C: Batch effects between different sequencing runs
5.3 years ago
A
▴ 40
0
votes
0
replies
2.8k
views
Comment:
C: Extracting VST matrix with batch effects removed
5.3 years ago
A
▴ 40
0
votes
1
reply
2.8k
views
Comment:
C: Extracting VST matrix with batch effects removed
5.3 years ago
A
▴ 40
0
votes
1
reply
2.8k
views
Comment:
C: Extracting VST matrix with batch effects removed
5.3 years ago
A
▴ 40
0
votes
6
replies
2.8k
views
Extracting VST matrix with batch effects removed
deseq2
batchcorrection
5.3 years ago
A
▴ 40
0
votes
0
replies
789
views
Comment:
C: Creating a similarity matrix for genes and not values
5.9 years ago
A
▴ 40
0
votes
2
replies
789
views
Creating a similarity matrix for genes and not values
similarity matrix
common genes
recurring groups
updated 5.9 years ago by
James W. MacDonald
67k • written 5.9 years ago by
A
▴ 40
0
votes
0
replies
1.6k
views
Comment:
C: Results table completely wrong for specified contrast of
5.9 years ago
A
▴ 40
0
votes
1
reply
1.6k
views
Comment:
C: Results table completely wrong for specified contrast of
updated 5.9 years ago by
Martin Morgan
25k • written 5.9 years ago by
A
▴ 40
0
votes
1
reply
1.6k
views
Comment:
C: Results table completely wrong for specified contrast of
6.0 years ago
A
▴ 40
0
votes
7
replies
1.6k
views
Results table completely wrong for specified contrast of
DESeq2
logfoldchange
counts
updated 6.0 years ago by
Michael Love
43k • written 6.0 years ago by
A
▴ 40
3
votes
1
reply
1.4k
views
Answer:
C: RSubread in cygwin
6.0 years ago
A
▴ 40
0
votes
0
replies
1.4k
views
Comment:
C: RSubread in cygwin
6.0 years ago
A
▴ 40
2
votes
1
reply
1.5k
views
Data preparation and Machine learning on time course RNAseq data
machine learning
deep learning
RNAseq
MLSeq
6.0 years ago
A
▴ 40
0
votes
0
replies
3.1k
views
Comment:
C: mapping FASTQ files to single gene (fluorescent reporter)
6.0 years ago
A
▴ 40
0
votes
1
reply
3.1k
views
Comment:
C: mapping FASTQ files to single gene (fluorescent reporter)
6.0 years ago
A
▴ 40
0
votes
0
replies
3.1k
views
Comment:
C: mapping FASTQ files to single gene (fluorescent reporter)
6.1 years ago
A
▴ 40
0
votes
0
replies
1.5k
views
Comment:
C: Can DEXSeq ouput be used directly as an input for IsoformSwitchAnalyzeR
6.1 years ago
A
▴ 40
0
votes
1
reply
1.5k
views
Comment:
C: Can DEXSeq ouput be used directly as an input for IsoformSwitchAnalyzeR
6.1 years ago
A
▴ 40
1
vote
5
replies
1.5k
views
Can DEXSeq ouput be used directly as an input for IsoformSwitchAnalyzeR
isoformswitchanalyzer
isoform
differential isoform usage
written 6.1 years ago by
A
▴ 40
0
votes
1
reply
3.1k
views
Comment:
C: mapping FASTQ files to single gene (fluorescent reporter)
6.1 years ago
A
▴ 40
0
votes
1
reply
3.1k
views
Comment:
C: mapping FASTQ files to single gene (fluorescent reporter)
6.1 years ago
A
▴ 40
0
votes
1
reply
3.1k
views
Comment:
C: mapping FASTQ files to single gene (fluorescent reporter)
6.1 years ago
A
▴ 40
0
votes
1
reply
3.1k
views
Comment:
C: mapping FASTQ files to single gene (fluorescent reporter)
6.1 years ago
A
▴ 40
0
votes
9
replies
3.1k
views
mapping FASTQ files to single gene (fluorescent reporter)
rsubread
alignment
align
6.1 years ago
A
▴ 40
0
votes
0
replies
3.4k
views
Comment:
C: Featurecounts issue for counting exons: Not matching total counts mapped for spe
6.1 years ago
A
▴ 40
0
votes
1
reply
3.4k
views
Comment:
C: Featurecounts issue for counting exons: Not matching total counts mapped for spe
6.1 years ago
A
▴ 40
0
votes
9
replies
3.4k
views
Featurecounts issue for counting exons: Not matching total counts mapped for specific gene
featurecounts
Rsubread
ggbio
updated 6.1 years ago by
Wei Shi
★ 3.6k • written 6.1 years ago by
A
▴ 40
0
votes
0
replies
1.0k
views
Quantifying reporter expression to validate sequencing
alignment
Fastq
fasta
6.1 years ago
A
▴ 40
0
votes
0
replies
1.1k
views
Comment:
C: Preparation of summarizedExperiment for dexSeq
6.2 years ago
A
▴ 40
0
votes
2
replies
1.1k
views
Preparation of summarizedExperiment for dexSeq
dexseq
genomicalignments
genomicfeatures
genomicranges
6.2 years ago
A
▴ 40
0
votes
0
replies
960
views
Comment:
C: Duplication of same sample as if two different samples
6.3 years ago
A
▴ 40
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