Bioconductor Volcanoplot

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1.1k

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RNA-seq DESeq2 volcanoplot

updated 3 months ago by Michael Love 43k • written 3 months ago by nramakr ▴ 10

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718

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DESeq2 volcanoplot LRT

updated 6 months ago by Michael Love 43k • written 7 months ago by Eric • 0

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2.1k

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DESeq2 volcanoplot deseq HELP contrast

updated 2.0 years ago by Basti ▴ 780 • written 2.0 years ago by Michael • 0

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1.3k

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plot volcano volcanoplot

updated 2.0 years ago by Basti ▴ 780 • written 2.0 years ago by Sooni ▴ 10

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815

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limma DEGreport Volcanoplot

updated 2.1 years ago by Gordon Smyth 52k • written 2.2 years ago by Mohammad • 0

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2.8k

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EnhancedVolcano RNASeqR R volcanoplot

updated 4.3 years ago by Kevin Blighe ★ 4.0k • written 4.3 years ago by camillab. ▴ 10

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3.1k

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limma volcanoplot pvalue logFC

updated 6.0 years ago by Gordon Smyth 52k • written 6.0 years ago by xingxd16 ▴ 20

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7.5k

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limma microarray volcanoplot color

updated 6.4 years ago by Gordon Smyth 52k • written 6.4 years ago by dmm204 • 0

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7.9k

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volcanoplot

updated 7.3 years ago by thokall ▴ 160 • written 7.3 years ago by Nithisha ▴ 10

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1.3k

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diffbind chipseq volcanoplot ggplot2

updated 7.4 years ago by Rory Stark ★ 5.2k • written 7.4 years ago by rbronste ▴ 60

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2.1k

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volcanoplot design and contrast matrix

updated 7.4 years ago by Gordon Smyth 52k • written 7.4 years ago by marongiu.luigi • 0

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12k

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volcanoplot limma fdr

7.6 years ago • updated 4.3 years ago tcalvo ▴ 100

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7.7k

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limma volcanoplot

updated 7.6 years ago by Gordon Smyth 52k • written 10.3 years ago by mccallionc403 • 0

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1.5k

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limma volcanoplot

updated 8.8 years ago by Aaron Lun ★ 28k • written 8.8 years ago by mheydarpour ▴ 10

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6.2k

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limma plot.MA volcanoplot oligo

updated 9.6 years ago by Gordon Smyth 52k • written 9.6 years ago by Gabriel Nathan Kaufman, Mr ▴ 60

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3.4k

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cummerbund ggplot2 size r volcanoplot

updated 10.2 years ago by James W. MacDonald 68k • written 10.2 years ago by ianmisner17 ▴ 20

16 results • Page 1 of 1

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Comment: Differential variance analysis - can i use deseq2 by Michael Love 43k

VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…

Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k

It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…

Comment: WGCNA by pammelala304 • 0

Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.

Comment: Does anyone have the command to download all of the core_nt using blast_db_get() by Matthew Thornton ▴ 380

Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…

Comment: normalizatino of dna methylation EPIC data by user_bioinfo • 0

yes actually that's why I did, and its all good! thank you for your response

Votes

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: normalizatino of dna methylation EPIC data

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Suggesting changing the "reply-to" field to the mailing list address.

Answer: UniProt.ws query for single UniRef90 ID takes several minutes

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Popular Question to Mark Dunning ★ 1.1k