Bioconductor Volcanoplot

Showing : volcanoplot • reset

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1.4k

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DESeq2 volcanoplot deseq HELP contrast

updated 16 months ago by Basti ▴ 780 • written 16 months ago by Michael • 0

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860

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plot volcano volcanoplot

updated 16 months ago by Basti ▴ 780 • written 16 months ago by Sooni ▴ 10

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619

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limma DEGreport Volcanoplot

updated 18 months ago by Gordon Smyth 51k • written 18 months ago by Mohammad • 0

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2.2k

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EnhancedVolcano RNASeqR R volcanoplot

updated 3.7 years ago by Kevin Blighe ★ 3.9k • written 3.7 years ago by camillab. ▴ 10

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2.5k

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limma volcanoplot pvalue logFC

updated 5.3 years ago by Gordon Smyth 51k • written 5.3 years ago by xingxd16 ▴ 20

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limma microarray volcanoplot color

updated 5.7 years ago by Gordon Smyth 51k • written 5.7 years ago by dmm204 • 0

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7.4k

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volcanoplot

updated 6.7 years ago by thokall ▴ 160 • written 6.7 years ago by Nithisha ▴ 10

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1.1k

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diffbind chipseq volcanoplot ggplot2

updated 6.7 years ago by Rory Stark ★ 5.2k • written 6.7 years ago by rbronste ▴ 60

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1.8k

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volcanoplot design and contrast matrix

updated 6.8 years ago by Gordon Smyth 51k • written 6.8 years ago by marongiu.luigi • 0

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9.6k

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volcanoplot limma fdr

6.9 years ago • updated 3.6 years ago tcalvo ▴ 90

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6.9k

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limma volcanoplot

updated 6.9 years ago by Gordon Smyth 51k • written 9.7 years ago by mccallionc403 • 0

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limma volcanoplot

updated 8.2 years ago by Aaron Lun ★ 28k • written 8.2 years ago by mheydarpour ▴ 10

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limma plot.MA volcanoplot oligo

updated 9.0 years ago by Gordon Smyth 51k • written 9.0 years ago by Gabriel Nathan Kaufman, Mr ▴ 60

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3.2k

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cummerbund ggplot2 size r volcanoplot

updated 9.6 years ago by James W. MacDonald 66k • written 9.6 years ago by ianmisner17 ▴ 20

14 results • Page 1 of 1

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Comment: Ranking the GSEA Results by Lluís Revilla Sancho ▴ 730

You can have the ranking without the cutoff. If you don't keep any gene set after the cutoff then there is nothing to rank as you said, so…

Answer: Create a Graph w/ Only the Genes Interaction by Antonio • 0

Thank you all, I solved my issue by creating a for loop. Cheers!

Comment: Ranking the GSEA Results by alserg ▴ 270

Apparently, it sends a notification to the developer on a new message after the tags were updated :) but not the change of tags itself

Comment: Ranking the GSEA Results by alserg ▴ 270

Where did you see ranking of genes by `log2FC * (-log10 p-value)`? I don't think I ever saw one and not sure what it should achieve. Aren't…

Comment: Trouble Installing DADA2 (warning: R new user) by shepherl 3.9k

As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…

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Comment: Ranking the GSEA Results

Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)

ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features

Comment: How to get the DMR?

Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it

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Popular Question to mohammedtoufiq91 ▴ 10