Bioconductor Volcanoplot

Showing : volcanoplot • reset

votes

596

views

DESeq2 volcanoplot LRT

updated 3 months ago by Michael Love 42k • written 3 months ago by Eric • 0

votes

replies

1.8k

views

DESeq2 volcanoplot deseq HELP contrast

updated 20 months ago by Basti ▴ 780 • written 20 months ago by Michael • 0

votes

1.1k

views

plot volcano volcanoplot

updated 21 months ago by Basti ▴ 780 • written 21 months ago by Sooni ▴ 10

votes

743

views

limma DEGreport Volcanoplot

updated 22 months ago by Gordon Smyth 51k • written 22 months ago by Mohammad • 0

votes

replies

2.5k

views

EnhancedVolcano RNASeqR R volcanoplot

updated 4.0 years ago by Kevin Blighe ★ 4.0k • written 4.0 years ago by camillab. ▴ 10

vote

replies

2.9k

views

limma volcanoplot pvalue logFC

updated 5.7 years ago by Gordon Smyth 51k • written 5.7 years ago by xingxd16 ▴ 20

votes

replies

7.3k

views

limma microarray volcanoplot color

updated 6.1 years ago by Gordon Smyth 51k • written 6.1 years ago by dmm204 • 0

votes

replies

7.7k

views

volcanoplot

updated 7.0 years ago by thokall ▴ 160 • written 7.0 years ago by Nithisha ▴ 10

votes

1.2k

views

diffbind chipseq volcanoplot ggplot2

updated 7.1 years ago by Rory Stark ★ 5.2k • written 7.1 years ago by rbronste ▴ 60

votes

replies

2.0k

views

volcanoplot design and contrast matrix

updated 7.1 years ago by Gordon Smyth 51k • written 7.1 years ago by marongiu.luigi • 0

votes

replies

11k

views

volcanoplot limma fdr

7.3 years ago • updated 4.0 years ago tcalvo ▴ 100

votes

replies

7.3k

views

limma volcanoplot

updated 7.3 years ago by Gordon Smyth 51k • written 10.0 years ago by mccallionc403 • 0

votes

replies

1.4k

views

limma volcanoplot

updated 8.5 years ago by Aaron Lun ★ 28k • written 8.5 years ago by mheydarpour ▴ 10

votes

replies

6.1k

views

limma plot.MA volcanoplot oligo

updated 9.3 years ago by Gordon Smyth 51k • written 9.3 years ago by Gabriel Nathan Kaufman, Mr ▴ 60

votes

replies

3.3k

views

cummerbund ggplot2 size r volcanoplot

updated 9.9 years ago by James W. MacDonald 67k • written 9.9 years ago by ianmisner17 ▴ 20

15 results • Page 1 of 1

Recent ...

Replies

Comment: How many of my genes from my gene list are in each KEGG pathway? by josephasmith1310 • 0

> You can compare the number in the column setSize versus the number of > genes in core_enrichment. The former corresponds to the number of…

Comment: EuroBioC2024 abstract submission is open! by Esperan • 0

Great information about the EuroBioC2024 conference! https://openreview.net/group?id=bioconductor.org/EuroBioC/2024/Conferences [slope](htt…

Answer: Combining RNAseq and microarray data using edgeR/limma-voom by Gordon Smyth 51k

I agree with James, although I tend to combine analyses using geneset tests rather than by meta analysis tools like GeneMeta. > My questio…

Comment: Adjusted p-values become NA when sub-setting samples by txema.heredia • 0

Thanks! I've been looking into DESeq2's code and, indeed, I get matching results when running manually the code inherited from the `genefi…

Answer: DESeq2 interaction between cancer cells and microenvironment cells by Michael Love 42k

I don't really know what you mean by "come from the contamination". You can look at the main effects and the interaction, but I don't know …

Votes

Answer: How do I merge a list of GRanges?

A: p.adjust BH generates duplicate values

Answer: Adjusted p-values become NA when sub-setting samples

Comment: Suggestion for FGSEA and GSEA creation for C57BL/6J Mice

Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim

Awards • All