Bioconductor DEGreport

Showing : DEGreport • reset

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585

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limma DEGreport Volcanoplot

updated 16 months ago by Gordon Smyth 50k • written 16 months ago by Mohammad • 0

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863

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DEGseq clusterProfiler DEGreport

18 months ago Rob • 0

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3.0k

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DEGreport

updated 8 months ago by James W. MacDonald 65k • written 19 months ago by marinaw ▴ 20

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1.6k

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BiocGenerics DESeq2 DEGreport RNASeqData DEG

updated 22 months ago by James W. MacDonald 65k • written 22 months ago by Diya • 0

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3.4k

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DESeq2 RNASeq DEGreport

updated 18 months ago by Michael Love 42k • written 3.2 years ago by Giulia ▴ 10

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940

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RNASeqData DEGreport edgeR

3.2 years ago Wuschel ▴ 10

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9.2k

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DEGreport DegPlot

updated 4.0 years ago by Kevin Blighe ★ 3.9k • written 4.0 years ago by kavator ▴ 30

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899

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DEGreport

updated 4.1 years ago by Lorena Pantano ▴ 120 • written 4.1 years ago by kavator ▴ 30

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2.4k

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DEGreport

updated 4.1 years ago by Martin Morgan 25k • written 4.1 years ago by kavator ▴ 30

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1.6k

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DEGreport deseq2

updated 5.1 years ago by Lorena Pantano ▴ 120 • written 5.1 years ago by lqsdau ▴ 10

10 results • Page 1 of 1

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Comment: Ensembl plants at annotationHub? by Daniele • 0

Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30

Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…

Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0

Thanks a lot!

Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150

Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by Matthew Thornton ▴ 360

So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!

Votes

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?

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