Bioconductor Volcano

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plot volcano volcanoplot

updated 16 months ago by Basti ▴ 780 • written 16 months ago by Sooni ▴ 10

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DESeq2 adjp Volcano LRT

written 19 months ago by Laia ▴ 10

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DESeq2 volcano

updated 20 months ago by Michael Love 42k • written 21 months ago by nico • 0

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Comment: error loading collectTRI regulon by silvaesilva.da • 0

Fantastic. Thank you very much. Everything has been sorted out

Answer: DESeq2 returns results for group with just one replicate by James W. MacDonald 66k

There is no problem having only one replicate per group, so long as you have replicates for other groups. The degrees of freedom are based …

Answer: Limma model.matrix design with batch effect and different life stages proportion by Masongeorge • 0

Thanks for this post. i found it helpful for my own issue that was occurring on the backend of this page.

Comment: error loading collectTRI regulon by deeenes ▴ 50

I fixed the original, Ensembl HTTP 403 error only now, [see here][1]. If you've seen it gone earlier today, only shows that this error appe…

Answer: GESA with certain gene list returns no result with human genom, but many result by James W. MacDonald 66k

Ideally you would use something better than gene symbols for this. I realize that biologists like gene symbols, but they are really terribl…

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Comment: error loading collectTRI regulon

A: Scaling option in fastMNN

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Scholar to James W. MacDonald 66k